Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq81 390 2e-106 seq58 390 2e-106 seq10 390 2e-106 >seq81 Length=1043490 Score = 390 bits (432), Expect = 2e-106 Identities = 244/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1038972 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1039029 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1039030 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGATT 1039089 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1039090 ACCCGGGCCTGTCGGCCAAGGCGGTAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 1039149 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1039150 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 1039209 Query 240 GGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 1039210 GACCATAGTCCCTCTAA 1039226 Score = 389 bits (430), Expect = 6e-106 Identities = 236/246 (96%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1021377 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1021434 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1021435 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGATT 1021494 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1021495 ACCCGGGCCTGTCGGCCAAGGCGGTAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 1021554 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1021555 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 1021614 Query 240 GGCCAT 245 | |||| Sbjct 1021615 GACCAT 1021620 Score = 385 bits (426), Expect = 7e-105 Identities = 244/258 (95%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGC-TTACTAGGAATTT 59 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1030172 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCCTTACTAGGAATT- 1030229 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGAT 118 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1030230 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGAT 1030289 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1030290 TACCCGGGCCTGTCGGCCAAGGCGGTAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 1030349 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1030350 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAA 1030409 Query 239 AGGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 1030410 CGACCATAGTCCCTCTAA 1030427 >seq58 Length=1363798 Score = 390 bits (432), Expect = 2e-106 Identities = 244/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1337117 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1337060 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1337059 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGATT 1337000 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1336999 ACCCGGGCCTGTCGGCCAAGGCGGTAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 1336940 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1336939 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 1336880 Query 240 GGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 1336879 GACCATAGTCCCTCTAA 1336863 >seq10 Length=3646474 Score = 390 bits (432), Expect = 2e-106 Identities = 244/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 3330412 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 3330355 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 3330354 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGATT 3330295 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 3330294 ACCCGGGCCTGTCGGCCAAGGCGGTAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 3330235 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3330234 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAAC 3330175 Query 240 GGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 3330174 GACCATAGTCCCTCTAA 3330158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993472640