Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq81 235 1e-59
seq58 235 1e-59
seq10 235 1e-59
seq8 91.5 3e-16
>seq81
Length=1043490
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||||||||| | | || |
Sbjct 1022339 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1022280
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | | |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1022279 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1022220
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1022219 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1022161
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1022160 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1022101
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 1022100 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1022042
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1022041 GAACGAAAGTTGGGGG 1022026
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||||||||| | | || |
Sbjct 1039934 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1039875
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | | |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1039874 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1039815
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1039814 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1039756
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1039755 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1039696
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 1039695 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1039637
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1039636 GAACGAAAGTTGGGGG 1039621
Score = 226 bits (250), Expect = 5e-57
Identities = 244/316 (77%), Gaps = 9/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||||||||| | | || |
Sbjct 1031133 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1031074
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | | |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1031073 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1031014
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1031013 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1030955
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||| | ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1030954 GTAATGATTAACAGG-ACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1030896
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 1030895 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1030837
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1030836 GAACGAAAGTTGGGGG 1030821
>seq58
Length=1363798
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||||||||| | | || |
Sbjct 1336155 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1336214
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | | |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1336215 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1336274
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1336275 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1336333
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1336334 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1336393
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 1336394 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1336452
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1336453 GAACGAAAGTTGGGGG 1336468
>seq10
Length=3646474
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
||||||| | | ||||||| | ||| ||| || |||||||||| | | || |
Sbjct 3329450 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 3329509
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | | |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 3329510 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 3329569
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 3329570 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 3329628
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 3329629 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 3329688
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 3329689 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 3329747
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 3329748 GAACGAAAGTTGGGGG 3329763
>seq8
Length=3569224
Score = 91.5 bits (100), Expect = 3e-16
Identities = 110/146 (75%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 93 AGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTG 151
|||| ||||||||||||| | || | |||||||| |||| |||| | |||||| |
Sbjct 2057534 AGTGCTCAAAGCAGGCCTACGTTCTGTATACATTAACATGTGATAACATCATAGGAT-TC 2057476
Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211
|||| ||||| ||||| | ||| || ||||||||||| ||||| ||||||||
Sbjct 2057475 CGGTCCTATTAGGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGCAT 2057416
Query 212 TCAGTATTCAATTGTCAGAGGTGAAA 237
|| ||||| || |||||| ||||||
Sbjct 2057415 TC-GTATTTCATAGTCAGAAGTGAAA 2057391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915191799808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |