Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq81 235 1e-59 seq58 235 1e-59 seq10 235 1e-59 seq8 91.5 3e-16 >seq81 Length=1043490 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||||||||| | | || | Sbjct 1022339 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1022280 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | | |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1022279 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1022220 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1022219 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1022161 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1022160 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1022101 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||| |||| Sbjct 1022100 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1022042 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1022041 GAACGAAAGTTGGGGG 1022026 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||||||||| | | || | Sbjct 1039934 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1039875 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | | |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1039874 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1039815 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1039814 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1039756 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1039755 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1039696 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||| |||| Sbjct 1039695 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1039637 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1039636 GAACGAAAGTTGGGGG 1039621 Score = 226 bits (250), Expect = 5e-57 Identities = 244/316 (77%), Gaps = 9/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||||||||| | | || | Sbjct 1031133 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1031074 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | | |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1031073 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1031014 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1031013 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1030955 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||| | ||||||||| | ||||| || |||||||||||||||||| Sbjct 1030954 GTAATGATTAACAGG-ACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1030896 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||| |||| Sbjct 1030895 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1030837 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1030836 GAACGAAAGTTGGGGG 1030821 >seq58 Length=1363798 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||||||||| | | || | Sbjct 1336155 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 1336214 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | | |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1336215 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1336274 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1336275 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 1336333 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1336334 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1336393 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||| |||| Sbjct 1336394 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 1336452 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1336453 GAACGAAAGTTGGGGG 1336468 >seq10 Length=3646474 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 ||||||| | | ||||||| | ||| ||| || |||||||||| | | || | Sbjct 3329450 CCGGCCGCCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTCACTGGCCGGGTCGTGC 3329509 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | | |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 3329510 CTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 3329569 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 3329570 ATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA 3329628 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 3329629 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 3329688 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||| |||| Sbjct 3329689 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-A 3329747 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 3329748 GAACGAAAGTTGGGGG 3329763 >seq8 Length=3569224 Score = 91.5 bits (100), Expect = 3e-16 Identities = 110/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 93 AGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTG 151 |||| ||||||||||||| | || | |||||||| |||| |||| | |||||| | Sbjct 2057534 AGTGCTCAAAGCAGGCCTACGTTCTGTATACATTAACATGTGATAACATCATAGGAT-TC 2057476 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||| ||||| ||||| | ||| || ||||||||||| ||||| |||||||| Sbjct 2057475 CGGTCCTATTAGGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGCAT 2057416 Query 212 TCAGTATTCAATTGTCAGAGGTGAAA 237 || ||||| || |||||| |||||| Sbjct 2057415 TC-GTATTTCATAGTCAGAAGTGAAA 2057391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191799808