Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq144 230 6e-58
seq208 201 3e-49
seq63 86.0 2e-14
>seq144
Length=473486
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 55098 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 55039
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | ||| | | ||
Sbjct 55038 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 54979
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 54978 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 54919
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 54918 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 54859
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| |||||||||| |
Sbjct 54858 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 54799
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 54798 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 54739
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 54738 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 54690
>seq208
Length=245570
Score = 201 bits (222), Expect = 3e-49
Identities = 247/334 (74%), Gaps = 10/334 (3%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 115298 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 115239
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124
|| ||||||| ||||||||||||| | || ||||||| | | || || |||
Sbjct 115238 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 115182
Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183
|| | | | || |||| | | ||| | | || ||| ||||| | |||||
Sbjct 115181 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 115125
Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243
| | |||||||| | |||||| ||||||| ||||||| | | ||||| |||| ||
Sbjct 115124 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAGGCCAAAAGC 115065
Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303
||||||||| | ||||| || |||||| | ||||||| |||||||| ||||||
Sbjct 115064 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 115005
Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||||||||| ||| ||||||||
Sbjct 115004 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 114971
Score = 122 bits (134), Expect = 2e-25
Identities = 106/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| |||||||||| |||||||| ||||||||||||| ||| |||
Sbjct 64040 TATCTGGGGAATAAGCATCGGCTAACTATGTGCCAGCTGCCGCGGTAATACAGAGGATGC 63981
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 63980 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 63921
Query 123 GAAATCCCCGGG 134
||||||| |||
Sbjct 63920 CAAATCCCAGGG 63909
>seq63
Length=1285062
Score = 86.0 bits (94), Expect = 2e-14
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 865163 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 865107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289588445184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |