Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq144 230 6e-58 seq208 201 3e-49 seq63 86.0 2e-14 >seq144 Length=473486 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 55098 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 55039 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 55038 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 54979 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 54978 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 54919 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 54918 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 54859 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 54858 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 54799 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 54798 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 54739 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 54738 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 54690 >seq208 Length=245570 Score = 201 bits (222), Expect = 3e-49 Identities = 247/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 115298 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 115239 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 115238 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 115182 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 115181 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 115125 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| ||||||| | | ||||| |||| || Sbjct 115124 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAGGCCAAAAGC 115065 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 115064 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 115005 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 115004 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 114971 Score = 122 bits (134), Expect = 2e-25 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| |||||||||| |||||||| ||||||||||||| ||| ||| Sbjct 64040 TATCTGGGGAATAAGCATCGGCTAACTATGTGCCAGCTGCCGCGGTAATACAGAGGATGC 63981 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 63980 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 63921 Query 123 GAAATCCCCGGG 134 ||||||| ||| Sbjct 63920 CAAATCCCAGGG 63909 >seq63 Length=1285062 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 865163 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 865107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289588445184