Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq144 484 2e-134 seq4 215 2e-53 seq208 196 1e-47 seq7 116 1e-23 seq63 113 1e-22 seq290 111 5e-22 seq64 98.7 3e-18 seq1 75.2 3e-11 >seq144 Length=473486 Score = 484 bits (536), Expect = 2e-134 Identities = 408/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 54692 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 54633 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 54632 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 54573 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 54572 TTGAAAGAGAGGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 54515 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 54514 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 54455 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 54454 CACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 54395 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 54394 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 54335 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || |||| ||| || |||||||||||||| Sbjct 54334 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 54275 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 54274 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 54215 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 54214 CGGTGAATTCGTTCCCG 54198 >seq4 Length=5414181 Score = 215 bits (238), Expect = 2e-53 Identities = 182/224 (81%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 |||||||||| |||| |||| || || || | |||||||||||| || |||||||||| Sbjct 735236 TTAGTTGCCACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAG 735177 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 ||| ||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 735176 GTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATG 735117 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | | |||||||| |||| |||||||| ||| || |||| ||| || |||||| Sbjct 735116 GCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGT 735057 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 |||||||| || |||||||||| || ||||||| ||||||||| Sbjct 735056 TCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCT 735013 >seq208 Length=245570 Score = 196 bits (216), Expect = 1e-47 Identities = 188/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 114322 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 114263 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 114262 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 114204 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 114203 AGCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 114145 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 114144 TTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 114088 Score = 172 bits (190), Expect = 2e-40 Identities = 180/234 (77%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 114903 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 114844 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 114843 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 114791 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 ||| | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 114790 AAGA---AAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 114734 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 114733 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 114680 >seq7 Length=3811939 Score = 116 bits (128), Expect = 1e-23 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3318805 CGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 3318864 Query 67 TAATTCGAAGCAACGCGAA 85 |||||||| || || |||| Sbjct 3318865 TAATTCGATGCGACTCGAA 3318883 >seq63 Length=1285062 Score = 113 bits (124), Expect = 1e-22 Identities = 85/99 (86%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 865039 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCT-GCACAAGCGGTGGAGCAT 864981 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99 |||||||||||||| ||||||| | ||||| |||||| Sbjct 864980 GTGGTTTAATTCGATACAACGCGCAAAACCTCTCCAAAT 864942 >seq290 Length=115878 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 |||||||| ||| || |||| ||| || |||||||||||||| || |||||||||| Sbjct 36717 CCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCG 36776 Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTC 493 || ||||||| ||||||||||||||||| | |||| ||| | |||||||| ||||| Sbjct 36777 CCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTC 36836 Query 494 CCG 496 ||| Sbjct 36837 CCG 36839 >seq64 Length=1284297 Score = 98.7 bits (108), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||| ||||||| |||| |||||| |||||||||||||||||||| Sbjct 890858 CGCAAGAACGAAACTAAAATGAATTGATGGGG-CCCGCATAAGCGGTGGAGCATGTGGTT 890916 Query 67 TAATTCGAAGCAACGCGAAG-AACCTTA 93 |||||||| || | |||||| ||||||| Sbjct 890917 TAATTCGATGCGAAGCGAAGAAACCTTA 890944 >seq1 Length=14257138 Score = 75.2 bits (82), Expect = 3e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC 209 ||||||| ||||||| ||||||||||| ||||||||||||||| ||| |||||| Sbjct 6542018 ACAGGTGCTGCATGGCTGTCGTCAGCTGGTGTCGTGAGATGTTTGGTCAAGTCC 6542071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503986524160