Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq144 484 2e-134
seq4 215 2e-53
seq208 196 1e-47
seq7 116 1e-23
seq63 113 1e-22
seq290 111 5e-22
seq64 98.7 3e-18
seq1 75.2 3e-11
>seq144
Length=473486
Score = 484 bits (536), Expect = 2e-134
Identities = 408/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 54692 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 54633
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 54632 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 54573
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 54572 TTGAAAGAGAGGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 54515
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 54514 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 54455
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| |||| |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 54454 CACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 54395
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 54394 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 54335
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || |||| ||| || ||||||||||||||
Sbjct 54334 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 54275
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 54274 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 54215
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 54214 CGGTGAATTCGTTCCCG 54198
>seq4
Length=5414181
Score = 215 bits (238), Expect = 2e-53
Identities = 182/224 (81%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292
|||||||||| |||| |||| || || || | |||||||||||| || ||||||||||
Sbjct 735236 TTAGTTGCCACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAG 735177
Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352
||| ||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 735176 GTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATG 735117
Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412
| | |||||||| |||| |||||||| ||| || |||| ||| || ||||||
Sbjct 735116 GCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGT 735057
Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456
|||||||| || |||||||||| || ||||||| |||||||||
Sbjct 735056 TCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCT 735013
>seq208
Length=245570
Score = 196 bits (216), Expect = 1e-47
Identities = 188/237 (79%), Gaps = 3/237 (1%)
Strand=Plus/Minus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 114322 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 114263
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385
||||| |||||||||||||||||| |||| |||| ||| ||| | | | |||
Sbjct 114262 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 114204
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| ||||| || ||| ||||||||||||||| ||||||||||| | ||||||
Sbjct 114203 AGCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 114145
Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 114144 TTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 114088
Score = 172 bits (190), Expect = 2e-40
Identities = 180/234 (77%), Gaps = 17/234 (7%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 114903 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 114844
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| ||||||| | ||| |
Sbjct 114843 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 114791
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
||| | | | ||| ||| || || || | ||||||| ||||||| ||
Sbjct 114790 AAGA---AAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 114734
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 114733 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 114680
>seq7
Length=3811939
Score = 116 bits (128), Expect = 1e-23
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3318805 CGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 3318864
Query 67 TAATTCGAAGCAACGCGAA 85
|||||||| || || ||||
Sbjct 3318865 TAATTCGATGCGACTCGAA 3318883
>seq63
Length=1285062
Score = 113 bits (124), Expect = 1e-22
Identities = 85/99 (86%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 865039 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCT-GCACAAGCGGTGGAGCAT 864981
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99
|||||||||||||| ||||||| | ||||| ||||||
Sbjct 864980 GTGGTTTAATTCGATACAACGCGCAAAACCTCTCCAAAT 864942
>seq290
Length=115878
Score = 111 bits (122), Expect = 5e-22
Identities = 99/123 (80%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434
|||||||| ||| || |||| ||| || |||||||||||||| || ||||||||||
Sbjct 36717 CCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCG 36776
Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTC 493
|| ||||||| ||||||||||||||||| | |||| ||| | |||||||| |||||
Sbjct 36777 CCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTC 36836
Query 494 CCG 496
|||
Sbjct 36837 CCG 36839
>seq64
Length=1284297
Score = 98.7 bits (108), Expect = 3e-18
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||| ||| ||||||| |||| |||||| ||||||||||||||||||||
Sbjct 890858 CGCAAGAACGAAACTAAAATGAATTGATGGGG-CCCGCATAAGCGGTGGAGCATGTGGTT 890916
Query 67 TAATTCGAAGCAACGCGAAG-AACCTTA 93
|||||||| || | |||||| |||||||
Sbjct 890917 TAATTCGATGCGAAGCGAAGAAACCTTA 890944
>seq1
Length=14257138
Score = 75.2 bits (82), Expect = 3e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC 209
||||||| ||||||| ||||||||||| ||||||||||||||| ||| ||||||
Sbjct 6542018 ACAGGTGCTGCATGGCTGTCGTCAGCTGGTGTCGTGAGATGTTTGGTCAAGTCC 6542071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503986524160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |