Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq81 293 4e-77 seq58 293 4e-77 seq10 293 4e-77 >seq81 Length=1043490 Score = 293 bits (324), Expect = 4e-77 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030318 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1030377 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 1030378 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1030437 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 1030438 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1030497 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030498 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1030557 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 1030558 AAAGAGCTCTCAGTCTGTC 1030576 Score = 293 bits (324), Expect = 4e-77 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039117 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1039176 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 1039177 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1039236 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 1039237 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1039296 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039297 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1039356 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 1039357 AAAGAGCTCTCAGTCTGTC 1039375 Score = 271 bits (300), Expect = 1e-70 Identities = 221/268 (82%), Gaps = 20/268 (7%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021522 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1021581 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA-GCCAGC 120 |||||||||||||||||||||| | | || | | | |||||||| |||| || || || Sbjct 1021582 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCCCTAAAAAAGCGGGC 1021641 Query 121 CA---------CCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 | || | ||||| ||| |||||||| | |||||||||||||| Sbjct 1021642 CGGGGGGGGTGCCTCCGCATAG---------CTAGTTAGCAGGCTGAGGTCTCGTTCGTT 1021692 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1021693 AACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 1021752 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| ||| |||||| Sbjct 1021753 AGAATCAAGAAAGAGCTCTCAGTCTGTC 1021780 >seq58 Length=1363798 Score = 293 bits (324), Expect = 4e-77 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336972 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1336913 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 1336912 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1336853 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 1336852 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1336793 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336792 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1336733 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 1336732 AAAGAGCTCTCAGTCTGTC 1336714 >seq10 Length=3646474 Score = 293 bits (324), Expect = 4e-77 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3330267 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3330208 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 3330207 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 3330148 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 3330147 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 3330088 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3330087 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 3330028 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 3330027 AAAGAGCTCTCAGTCTGTC 3330009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793083776