Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq81 293 4e-77
seq58 293 4e-77
seq10 293 4e-77
>seq81
Length=1043490
Score = 293 bits (324), Expect = 4e-77
Identities = 221/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030318 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1030377
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 1030378 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1030437
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | | | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 1030438 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1030497
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030498 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1030557
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 1030558 AAAGAGCTCTCAGTCTGTC 1030576
Score = 293 bits (324), Expect = 4e-77
Identities = 221/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039117 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1039176
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 1039177 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1039236
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | | | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 1039237 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1039296
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039297 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1039356
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 1039357 AAAGAGCTCTCAGTCTGTC 1039375
Score = 271 bits (300), Expect = 1e-70
Identities = 221/268 (82%), Gaps = 20/268 (7%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021522 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1021581
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA-GCCAGC 120
|||||||||||||||||||||| | | || | | | |||||||| |||| || || ||
Sbjct 1021582 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCCCTAAAAAAGCGGGC 1021641
Query 121 CA---------CCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170
| || | ||||| ||| |||||||| | ||||||||||||||
Sbjct 1021642 CGGGGGGGGTGCCTCCGCATAG---------CTAGTTAGCAGGCTGAGGTCTCGTTCGTT 1021692
Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021693 AACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 1021752
Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||| ||| ||||||
Sbjct 1021753 AGAATCAAGAAAGAGCTCTCAGTCTGTC 1021780
>seq58
Length=1363798
Score = 293 bits (324), Expect = 4e-77
Identities = 221/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336972 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1336913
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 1336912 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 1336853
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | | | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 1336852 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1336793
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336792 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1336733
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 1336732 AAAGAGCTCTCAGTCTGTC 1336714
>seq10
Length=3646474
Score = 293 bits (324), Expect = 4e-77
Identities = 221/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330267 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3330208
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 3330207 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCTGGCC 3330148
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | | | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 3330147 GCGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 3330088
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330087 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 3330028
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 3330027 AAAGAGCTCTCAGTCTGTC 3330009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796793083776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |