Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq321 107 4e-21 seq208 107 4e-21 seq179 89.7 1e-15 seq13 87.8 4e-15 >seq321 Length=132638 Score = 107 bits (118), Expect = 4e-21 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 109455 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 109514 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228 | | ||| || |||| | || || | ||| | || | || || | ||| Sbjct 109515 TGTGCGAAGGTAGGCTCAA---GCATTGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 109569 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 109570 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 109629 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 109630 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 109680 >seq208 Length=245570 Score = 107 bits (118), Expect = 4e-21 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 201027 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 200968 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228 | | ||| || |||| | || || | ||| | || | || || | ||| Sbjct 200967 TGTGCGAAGGTAGGCTCAA---GCATTGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 200913 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 200912 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 200853 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 200852 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 200802 >seq179 Length=362059 Score = 89.7 bits (98), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTT-GACTGCGACACCC--TCAAGTCTAGCAGGGACGAAA 267 |||||||||||| ||||| | | | |||| | |||| ||| || ||||| || ||| Sbjct 299364 AGTGCAAAGGCAGAAGGGAGCTCAGTCTGCAAGACCCATTCA--TCGAGCAGTGATAAAA 299421 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 |||| |||| ||||||| ||||| || || || ||||||||||||| |||||||| | Sbjct 299422 ATCGGCCTTAGTGATCCGACGGTGTCGAGTGAAAGGGCCGTCGCTCGATGGATAAAAATT 299481 Query 328 ACCCTGGGGATA 339 || || ||||| Sbjct 299482 ACTCTAAGGATA 299493 >seq13 Length=2998705 Score = 87.8 bits (96), Expect = 4e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 212 GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCG 271 ||||||||||| ||||| | | |||||| | |||| | || |||||||||| |||||| Sbjct 1630069 GTGCAAAGGCAGAAGGGAGCTAGACTGCAAGACCCACCCGTTGAGCAGGGACGGAAGTCG 1630128 Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCT 312 | ||| |||||| |||||| || ||||| ||||||| || Sbjct 1630129 GCTTTAGTGATCCAACGGTGCCGAGTGGAAGGGCCGTCACT 1630169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982391197696