Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq321 107 4e-21
seq208 107 4e-21
seq179 89.7 1e-15
seq13 87.8 4e-15
>seq321
Length=132638
Score = 107 bits (118), Expect = 4e-21
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 109455 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 109514
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| | ||| || |||| | || || | ||| | || | || || | |||
Sbjct 109515 TGTGCGAAGGTAGGCTCAA---GCATTGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 109569
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 109570 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 109629
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 109630 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 109680
>seq208
Length=245570
Score = 107 bits (118), Expect = 4e-21
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 201027 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 200968
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| | ||| || |||| | || || | ||| | || | || || | |||
Sbjct 200967 TGTGCGAAGGTAGGCTCAA---GCATTGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 200913
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 200912 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 200853
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 200852 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 200802
>seq179
Length=362059
Score = 89.7 bits (98), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTT-GACTGCGACACCC--TCAAGTCTAGCAGGGACGAAA 267
|||||||||||| ||||| | | | |||| | |||| ||| || ||||| || |||
Sbjct 299364 AGTGCAAAGGCAGAAGGGAGCTCAGTCTGCAAGACCCATTCA--TCGAGCAGTGATAAAA 299421
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327
|||| |||| ||||||| ||||| || || || ||||||||||||| |||||||| |
Sbjct 299422 ATCGGCCTTAGTGATCCGACGGTGTCGAGTGAAAGGGCCGTCGCTCGATGGATAAAAATT 299481
Query 328 ACCCTGGGGATA 339
|| || |||||
Sbjct 299482 ACTCTAAGGATA 299493
>seq13
Length=2998705
Score = 87.8 bits (96), Expect = 4e-15
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 212 GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCG 271
||||||||||| ||||| | | |||||| | |||| | || |||||||||| ||||||
Sbjct 1630069 GTGCAAAGGCAGAAGGGAGCTAGACTGCAAGACCCACCCGTTGAGCAGGGACGGAAGTCG 1630128
Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCT 312
| ||| |||||| |||||| || ||||| ||||||| ||
Sbjct 1630129 GCTTTAGTGATCCAACGGTGCCGAGTGGAAGGGCCGTCACT 1630169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982391197696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |