Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq144 226 6e-57
seq208 206 6e-51
seq6 107 4e-21
>seq144
Length=473486
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 55157 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 55215
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 55216 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 55275
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 55276 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 55335
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 55336 CCT-----CG---GGC-----GGATTCCTCCTTTTACTCCTCAG-CCTACGGGGTATTAG 55381
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 55382 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 55439
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 55440 GTCCGCCACT 55449
>seq208
Length=245570
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 115333 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 115390
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 115391 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 115450
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 115451 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 115510
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 115511 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 115550
>seq6
Length=4684332
Score = 107 bits (118), Expect = 4e-21
Identities = 155/213 (73%), Gaps = 7/213 (3%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCA--GGCTTTC 56
|||||||| | | | | ||||||| ||| || ||| |||| |||||| |||||||
Sbjct 1536482 CTTTACAAACAGCATTGCCCTTCTT-CACTCATGCGATATTGT-TGGATCTCGGGCTTTC 1536425
Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116
||||||||||||| |||||| || |||| | | | ||||| ||| |||||||||||
Sbjct 1536424 GCCCATTGTCCAAGATTCCCATTTGTTGCCCCTCATGGGAGTTCGGATCGTGTCTCAGTC 1536365
Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176
||| |||| ||||||||| ||||||| || | ||| | | |||||| | | ||
Sbjct 1536364 CCAATGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCAT-GTCTTGGTCAATTCTCAC 1536306
Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATC 209
| |||||||| | || | || | |||||||
Sbjct 1536305 ATGACCAACTACGTGATACTACGCATGCTCATC 1536273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071990394880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |