Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq144 226 6e-57 seq208 206 6e-51 seq6 107 4e-21 >seq144 Length=473486 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 55157 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 55215 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 55216 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 55275 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 55276 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 55335 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 55336 CCT-----CG---GGC-----GGATTCCTCCTTTTACTCCTCAG-CCTACGGGGTATTAG 55381 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 55382 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 55439 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 55440 GTCCGCCACT 55449 >seq208 Length=245570 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 115333 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 115390 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 115391 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 115450 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 115451 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 115510 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 115511 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 115550 >seq6 Length=4684332 Score = 107 bits (118), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCA--GGCTTTC 56 |||||||| | | | | ||||||| ||| || ||| |||| |||||| ||||||| Sbjct 1536482 CTTTACAAACAGCATTGCCCTTCTT-CACTCATGCGATATTGT-TGGATCTCGGGCTTTC 1536425 Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||||||||||||| |||||| || |||| | | | ||||| ||| ||||||||||| Sbjct 1536424 GCCCATTGTCCAAGATTCCCATTTGTTGCCCCTCATGGGAGTTCGGATCGTGTCTCAGTC 1536365 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 ||| |||| ||||||||| ||||||| || | ||| | | |||||| | | || Sbjct 1536364 CCAATGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCAT-GTCTTGGTCAATTCTCAC 1536306 Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATC 209 | |||||||| | || | || | ||||||| Sbjct 1536305 ATGACCAACTACGTGATACTACGCATGCTCATC 1536273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071990394880