Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq234 277 7e-72
seq132 170 7e-40
seq321 168 2e-39
seq208 147 8e-33
seq188 140 1e-30
seq53 120 1e-24
>seq234
Length=218985
Score = 277 bits (306), Expect = 7e-72
Identities = 347/470 (74%), Gaps = 26/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 72877 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 72936
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 72937 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 72996
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 72997 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 73056
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||||||| |||||||||||||||||||| || || ||||
Sbjct 73057 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 73109
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 73110 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 73164
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
| | | ||| |||| || | ||| || || ||||||| || |||||||||
Sbjct 73165 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 73217
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 73218 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 73277
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 73278 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 73327
>seq132
Length=622545
Score = 170 bits (188), Expect = 7e-40
Identities = 218/294 (74%), Gaps = 16/294 (5%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 347061 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 347120
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 347121 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 347180
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 347181 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 347240
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||||||| |||||||||||||||||||| || || ||||
Sbjct 347241 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 347293
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423
|| || ||| | | | |||| |||||||||||||| |||||||| ||||
Sbjct 347294 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA 347345
>seq321
Length=132638
Score = 168 bits (186), Expect = 2e-39
Identities = 352/509 (69%), Gaps = 28/509 (6%)
Strand=Plus/Minus
Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143
|| ||||| |||||| |||| ||||||||||||| || | ||| ||||| ||
Sbjct 107846 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 107787
Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203
|||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |
Sbjct 107786 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 107727
Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262
|||| ||||||||| | ||| | || || ||||||||||||||||| | | |||
Sbjct 107726 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 107667
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322
| | ||||||||||| ||||| |||||| | | |||||||| || | |
Sbjct 107666 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGA----- 107613
Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380
||| | | || | | || | | | || |||| || | || |||| || | |
Sbjct 107612 ACGTC--AATCTTCCAC-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 107556
Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-----CT 433
|| | ||||| | | ||| | ||||||| | ||||| | || || | |
Sbjct 107555 CATTTC---CTCGCTGACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCG 107499
Query 434 AAAAGGCACTTC--AGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCAC 489
| ||||| | || |||| |||||| ||| | | |||||| ||||| |||
Sbjct 107498 CTAGCGCACTACGTTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 107439
Query 490 TCCCCGCCAGGGGTACTTTTCACC-TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548
|||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 107438 TCCCCGATTGGGGTTCTTTTCACCTTTTCCCTCACGGTACTTGTACGCTATCGGTCATTG 107379
Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCC 577
|||| || ||||||||| ||||||||||
Sbjct 107378 AGGAATACTTAGGCTTAGAGGGTGGTCCC 107350
>seq208
Length=245570
Score = 147 bits (162), Expect = 8e-33
Identities = 348/509 (68%), Gaps = 29/509 (6%)
Strand=Plus/Plus
Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143
|| ||||| |||||| |||| ||||||||||||| || | ||| ||||| ||
Sbjct 202636 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 202695
Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203
|||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |
Sbjct 202696 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 202755
Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262
|||| ||||||||| | ||| | || || ||||||||||||||||| | | |||
Sbjct 202756 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 202815
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322
| | ||||||||||| ||||| |||||| | | |||||||| || | |
Sbjct 202816 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGA----- 202869
Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380
||| | | || | | || | | | || |||| || | || |||| || | |
Sbjct 202870 ACGTC--AATCTTCCAC-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 202926
Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-----CT 433
|| | ||||| | | ||| | ||||||| | ||||| | || || | |
Sbjct 202927 CATTTC---CTCGCTGACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCG 202983
Query 434 AAAAGGCACTTC--AGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCAC 489
| ||||| | || |||| |||||| ||| | | |||||| ||||| |||
Sbjct 202984 CTAGCGCACTACGTTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 203043
Query 490 TCCCCGCCAGGGGTACTTTTCACC-TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548
|||||| ||||| ||||||||| || ||||| |||| |||| ||||||||||||
Sbjct 203044 TCCCCGATTGGGGTTCTTTTCACCGTTATCCTCAGGGTA-TTGTACGCTATCGGTCATTG 203102
Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCC 577
|||| || ||||||||| ||||||||||
Sbjct 203103 AGGAATACTTAGGCTTAGAGGGTGGTCCC 203131
>seq188
Length=392610
Score = 140 bits (154), Expect = 1e-30
Identities = 298/432 (69%), Gaps = 26/432 (6%)
Strand=Plus/Minus
Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219
|| |||||||||| | | ||| ||||||||||||||||| ||||| |||||||||
Sbjct 392610 GAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGT 392551
Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC-CGCGCTTCAACCTGCC 278
| ||| | || || ||||||||||||||||| | | ||| | | |||||||||||
Sbjct 392550 ATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCT 392491
Query 279 CATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACT 338
||||| |||||| | | |||||||| || | | ||| | | || |
Sbjct 392490 CATGGCTAGATCGATCGGTTTCGGGTCAA-ATAGGAAGA-----ACGTC--AATCTTCCA 392439
Query 339 CGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAG 396
| || | | | || |||| || | || |||| || | | || | ||||| |
Sbjct 392438 C-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTG 392383
Query 397 GCTCATTCTTCAAAAGGCACGCCGTCACC-----TGGTACCTAAA-AG-GCACTTCAG-- 447
| ||| | ||||||| | ||||| | || ||| || ||||| |
Sbjct 392382 ACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCGCTAGCGCACTACGTTC 392323
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| |
Sbjct 392322 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 392263
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 392262 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 392203
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 392202 GAGGGTGGTCCC 392191
>seq53
Length=1478458
Score = 120 bits (132), Expect = 1e-24
Identities = 159/219 (73%), Gaps = 14/219 (6%)
Strand=Plus/Minus
Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197
|||| ||| || |||| |||||||||||| ||| |||||| |||| |||| ||
Sbjct 852865 CTGCGCCTCAACGCATCTCGGGGAGAACCTGCTGG------GTTTGAGTGGCATTTCGCC 852812
Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257
|||| |||| |||||| || | | |||||| | ||||||||||| ||||||| ||
Sbjct 852811 CCTAAGCACAACTCATCCGCTGATTCTTCAACATCAGTGGGTTCGGACCTCCACTTAGTT 852752
Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGAT-CGTGC 315
|||||| |||||| |||| |||||||||||||| | ||| | | || ||
Sbjct 852751 TTACCCAAGCTTCATCCTGGTCATGGATAGATCAC------CCAGGTCCATAATAAGTTA 852698
Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
|| || |||||||| |||| |||||||||| ||||
Sbjct 852697 CAATCGCCCGCCCTATGAAGACTGGCTTTCGCTATGGCT 852659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817583714304
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