Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq234 277 7e-72 seq132 170 7e-40 seq321 168 2e-39 seq208 147 8e-33 seq188 140 1e-30 seq53 120 1e-24 >seq234 Length=218985 Score = 277 bits (306), Expect = 7e-72 Identities = 347/470 (74%), Gaps = 26/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 72877 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 72936 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 72937 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 72996 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 72997 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 73056 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||||| |||||||||||||||||||| || || |||| Sbjct 73057 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 73109 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 73110 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 73164 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | ||| |||| || | ||| || || ||||||| || ||||||||| Sbjct 73165 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 73217 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| | Sbjct 73218 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 73277 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 73278 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 73327 >seq132 Length=622545 Score = 170 bits (188), Expect = 7e-40 Identities = 218/294 (74%), Gaps = 16/294 (5%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 347061 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 347120 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 347121 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 347180 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 347181 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 347240 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||||| |||||||||||||||||||| || || |||| Sbjct 347241 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 347293 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423 || || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 347294 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA 347345 >seq321 Length=132638 Score = 168 bits (186), Expect = 2e-39 Identities = 352/509 (69%), Gaps = 28/509 (6%) Strand=Plus/Minus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 107846 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 107787 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 107786 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 107727 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 107726 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 107667 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | Sbjct 107666 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGA----- 107613 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 ||| | | || | | || | | | || |||| || | || |||| || | | Sbjct 107612 ACGTC--AATCTTCCAC-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 107556 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-----CT 433 || | ||||| | | ||| | ||||||| | ||||| | || || | | Sbjct 107555 CATTTC---CTCGCTGACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCG 107499 Query 434 AAAAGGCACTTC--AGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCAC 489 | ||||| | || |||| |||||| ||| | | |||||| ||||| ||| Sbjct 107498 CTAGCGCACTACGTTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 107439 Query 490 TCCCCGCCAGGGGTACTTTTCACC-TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||| Sbjct 107438 TCCCCGATTGGGGTTCTTTTCACCTTTTCCCTCACGGTACTTGTACGCTATCGGTCATTG 107379 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| || ||||||||| |||||||||| Sbjct 107378 AGGAATACTTAGGCTTAGAGGGTGGTCCC 107350 >seq208 Length=245570 Score = 147 bits (162), Expect = 8e-33 Identities = 348/509 (68%), Gaps = 29/509 (6%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 202636 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 202695 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 202696 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 202755 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 202756 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 202815 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | Sbjct 202816 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGA----- 202869 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 ||| | | || | | || | | | || |||| || | || |||| || | | Sbjct 202870 ACGTC--AATCTTCCAC-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 202926 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-----CT 433 || | ||||| | | ||| | ||||||| | ||||| | || || | | Sbjct 202927 CATTTC---CTCGCTGACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCG 202983 Query 434 AAAAGGCACTTC--AGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCAC 489 | ||||| | || |||| |||||| ||| | | |||||| ||||| ||| Sbjct 202984 CTAGCGCACTACGTTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 203043 Query 490 TCCCCGCCAGGGGTACTTTTCACC-TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||||| ||||| ||||||||| || ||||| |||| |||| |||||||||||| Sbjct 203044 TCCCCGATTGGGGTTCTTTTCACCGTTATCCTCAGGGTA-TTGTACGCTATCGGTCATTG 203102 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| || ||||||||| |||||||||| Sbjct 203103 AGGAATACTTAGGCTTAGAGGGTGGTCCC 203131 >seq188 Length=392610 Score = 140 bits (154), Expect = 1e-30 Identities = 298/432 (69%), Gaps = 26/432 (6%) Strand=Plus/Minus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 || |||||||||| | | ||| ||||||||||||||||| ||||| ||||||||| Sbjct 392610 GAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGT 392551 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC-CGCGCTTCAACCTGCC 278 | ||| | || || ||||||||||||||||| | | ||| | | ||||||||||| Sbjct 392550 ATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCT 392491 Query 279 CATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACT 338 ||||| |||||| | | |||||||| || | | ||| | | || | Sbjct 392490 CATGGCTAGATCGATCGGTTTCGGGTCAA-ATAGGAAGA-----ACGTC--AATCTTCCA 392439 Query 339 CGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAG 396 | || | | | || |||| || | || |||| || | | || | ||||| | Sbjct 392438 C-CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTG 392383 Query 397 GCTCATTCTTCAAAAGGCACGCCGTCACC-----TGGTACCTAAA-AG-GCACTTCAG-- 447 | ||| | ||||||| | ||||| | || ||| || ||||| | Sbjct 392382 ACCCATCATGCAAAAGGTAGGCCGTTAGAGTGAGTGCGCCCTCGCTAGCGCACTACGTTC 392323 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| | Sbjct 392322 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 392263 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 392262 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 392203 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 392202 GAGGGTGGTCCC 392191 >seq53 Length=1478458 Score = 120 bits (132), Expect = 1e-24 Identities = 159/219 (73%), Gaps = 14/219 (6%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| ||| || |||| |||||||||||| ||| |||||| |||| |||| || Sbjct 852865 CTGCGCCTCAACGCATCTCGGGGAGAACCTGCTGG------GTTTGAGTGGCATTTCGCC 852812 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| |||| |||||| || | | |||||| | ||||||||||| ||||||| || Sbjct 852811 CCTAAGCACAACTCATCCGCTGATTCTTCAACATCAGTGGGTTCGGACCTCCACTTAGTT 852752 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGAT-CGTGC 315 |||||| |||||| |||| |||||||||||||| | ||| | | || || Sbjct 852751 TTACCCAAGCTTCATCCTGGTCATGGATAGATCAC------CCAGGTCCATAATAAGTTA 852698 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || || |||||||| |||| |||||||||| |||| Sbjct 852697 CAATCGCCCGCCCTATGAAGACTGGCTTTCGCTATGGCT 852659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817583714304