Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq234 232 2e-58 seq132 131 4e-28 seq188 111 4e-22 seq321 105 2e-20 seq208 84.2 5e-14 >seq234 Length=218985 Score = 232 bits (256), Expect = 2e-58 Identities = 309/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 72943 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 72999 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 73000 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 73055 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 73056 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 73113 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 73114 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 73172 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 73173 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 73231 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 73232 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 73291 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 73292 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 73345 >seq132 Length=622545 Score = 131 bits (144), Expect = 4e-28 Identities = 208/284 (73%), Gaps = 12/284 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 347127 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 347183 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 347184 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 347239 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 347240 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 347297 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 347298 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 347356 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCA 290 ||||||||||||| || ||||||||| | ||||||||| Sbjct 347357 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCA 347400 >seq188 Length=392610 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 392317 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 392259 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 392258 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 392199 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 392198 GTGGTCCCCC 392189 >seq321 Length=132638 Score = 105 bits (116), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 107477 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 107419 Query 313 CGCCTTT-CCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 | ||||| ||||||||||||| || | |||||||||| | || | || |||| ||| ||| Sbjct 107418 CACCTTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAG 107359 Query 372 GATGGTCCCCC 382 | ||||||||| Sbjct 107358 GGTGGTCCCCC 107348 >seq208 Length=245570 Score = 84.2 bits (92), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 5/131 (4%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 203005 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 203063 Query 313 CGCC-TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 | || || ||||| |||| | || | |||||||||| | || | || |||| ||| ||| Sbjct 203064 CACCGTTATCCTCAGGGTA-TTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAG 203122 Query 372 GATGGTCCCCC 382 | ||||||||| Sbjct 203123 GGTGGTCCCCC 203133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241588875264