Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq144 167 4e-39
seq208 143 4e-32
>seq144
Length=473486
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 54814 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 54873
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 54874 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 54933
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | ||||||
Sbjct 54934 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 54993
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || |||
Sbjct 54994 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 55053
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 55054 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 55098
>seq208
Length=245570
Score = 143 bits (158), Expect = 4e-32
Identities = 206/288 (72%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| || ||||||| || |||| | | |||||||| ||| |
Sbjct 115016 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCT 115075
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| |||
Sbjct 115076 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 115135
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| || ||||| | ||| || | | || | | | |||||| |
Sbjct 115136 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 115190
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 115191 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 115250
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 115251 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 115298
Score = 109 bits (120), Expect = 9e-22
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||||
Sbjct 63938 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACC 63997
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||| |||||||| |||||||||| ||||||||| ||| ||
Sbjct 63998 GCGGCAGCTGGCACATAGTTAGCCGATGCTTATTCCCCAGATA 64040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828792806016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |