Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq144 320 5e-85 seq208 269 8e-70 seq6 138 3e-30 >seq144 Length=473486 Score = 320 bits (354), Expect = 5e-85 Identities = 280/345 (81%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 55328 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 55269 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 55268 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 55209 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 55208 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 55149 Query 340 AGGCCTTCGGGTCGT--AAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 ||||| |||||||| | | ||| | ||| ||||| |||||||||| |||||| Sbjct 55148 AGGCCCACGGGTCGTGAACACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTGAGGA 55089 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||| Sbjct 55088 ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATC 55029 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| || |||||||| || | ||||| Sbjct 55028 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 54985 >seq208 Length=245570 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 115525 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 115466 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 115465 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 115406 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 115405 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 115346 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 115345 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 115286 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 115285 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 115226 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 115225 CT-GGGCGTAAAGGGCACGTAGGCGGT 115200 Score = 152 bits (168), Expect = 2e-34 Identities = 158/205 (77%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 298 AATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 ||||||| ||||||||| | ||||| |||||||| | ||||||| |||||| | || Sbjct 64130 AATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAA 64071 Query 358 GCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACG 415 ||| | | | ||||| ||||| |||| || ||| |||| |||||||||| | Sbjct 64070 CTTCTTTTCCCGGAGAAGAAGCAATGATGGTATCTGGGGAATAAGCATCGGCTAACTATG 64011 Query 416 TGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAA 475 ||||||| ||||||||||||| ||| || ||||||||||||||| | | ||||||||| Sbjct 64010 TGCCAGCTGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAA 63952 Query 476 GGGTGCGTAGGTGGTTTCTTAAGTC 500 | || |||||||| || ||||||| Sbjct 63951 GCGTCTGTAGGTGGCTTTTTAAGTC 63927 >seq6 Length=4684332 Score = 138 bits (152), Expect = 3e-30 Identities = 159/211 (75%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 ||||| |||||||||| ||||||||||| ||| |||||| | | | |||| || |||| Sbjct 1536349 TGATCAGCCACATTGGGACTGAGACACGATCCGAACTCCCATGAGGGGCAACAAATGGGA 1536408 Query 289 ATATTGCACAATGGGCAAAAGCC--TGATGCAGCAACGCCGCGTGAGCGATGAAGGCC-- 344 || ||| ||||||||| |||||| ||| || ||| ||| |||| || ||||| | Sbjct 1536409 ATCTTGGACAATGGGCGAAAGCCCGAGATCCAACAATATCGCATGAGTGAAGAAGGGCAA 1536468 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | | | | |||||||||| || | | | | ||| |||| | ||| ||||| || ||| Sbjct 1536469 TGCTGTTTGTAAAGCTCTTTCATTGAGTGCACGATCATGATAGGACTCGAGGAAGAGGCC 1536528 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAA 433 ||||||||| ||||||||||||| ||||| Sbjct 1536529 TCGGCTAACTTTGTGCCAGCAGCCGAGGTAA 1536559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497586581504