Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq144 277 4e-72 seq208 226 7e-57 seq63 93.3 1e-16 >seq144 Length=473486 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 55094 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 55035 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 55034 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 54975 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 54974 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 54915 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 54914 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 54855 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 54854 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 54795 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 54794 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 54736 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 54735 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 54691 >seq208 Length=245570 Score = 226 bits (250), Expect = 7e-57 Identities = 256/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 115302 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 115243 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 115242 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 115183 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 115182 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 115129 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | ||||| ||| Sbjct 115128 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAGGCCAA 115069 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 115068 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 115009 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 115008 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 114969 Score = 113 bits (124), Expect = 1e-22 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| |||||||||| |||||||| ||||||||||||| ||| || ||| Sbjct 64036 TGGGGAATAAGCATCGGCTAACTATGTGCCAGCTGCCGCGGTAATACAGAGGATGCAAGC 63977 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||||||||| | ||||||||||| || |||||||| || ||||||| Sbjct 63976 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 63927 >seq63 Length=1285062 Score = 93.3 bits (102), Expect = 1e-16 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 865163 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 865105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203189219328