Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq81 306 7e-81
seq58 306 7e-81
seq10 306 7e-81
>seq81
Length=1043490
Score = 306 bits (338), Expect = 7e-81
Identities = 258/316 (82%), Gaps = 11/316 (3%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | ||| | | |||| || |||
Sbjct 1039284 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCCTCCGCGG----CCAGCT 1039229
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | | | || | | ||||||||||||||||||||||||||||||
Sbjct 1039228 TCTTAGAGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 1039169
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 1039168 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTACCGCC 1039109
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||||||
Sbjct 1039108 TTGGCCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCA 1039049
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 1039048 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 1038989
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 1038988 GTCCCTGCCCTTTGTA 1038973
Score = 298 bits (330), Expect = 1e-78
Identities = 258/317 (81%), Gaps = 12/317 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | ||| | | |||| || |||
Sbjct 1030485 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCCTCCGCGG----CCAGCT 1030430
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | | | || | | ||||||||||||||||||||||||||||||
Sbjct 1030429 TCTTAGAGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 1030370
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 1030369 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTACCGCC 1030310
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||||||
Sbjct 1030309 TTGGCCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCA 1030250
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAA-GCGCGTGTCATCAGCACGCGTTGATTA 311
||| ||| ||||||||||||||| |||||||| ||||| ||||||||| |||||||| ||
Sbjct 1030249 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGGCGCGAGTCATCAGCTCGCGTTGACTA 1030190
Query 312 CGTCCCTGCCCTTTGTA 328
|||||||||||||||||
Sbjct 1030189 CGTCCCTGCCCTTTGTA 1030173
Score = 289 bits (320), Expect = 5e-76
Identities = 219/257 (85%), Gaps = 1/257 (0%)
Strand=Plus/Minus
Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|| |||| |||||||| | | | || | | |||||||||||||||||||||||||||||
Sbjct 1021634 TTTTTAGGGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGA 1021575
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||||||||||||||||||||||||||||| | |||||||| | | |
Sbjct 1021574 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTACCGC 1021515
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251
|||||||| ||| | |||||||||| ||| | ||||| |||||||||| ||||||
Sbjct 1021514 CTTGGCCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGC 1021455
Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311
|||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||
Sbjct 1021454 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 1021395
Query 312 CGTCCCTGCCCTTTGTA 328
|||||||||||||||||
Sbjct 1021394 CGTCCCTGCCCTTTGTA 1021378
>seq58
Length=1363798
Score = 306 bits (338), Expect = 7e-81
Identities = 258/316 (82%), Gaps = 11/316 (3%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | ||| | | |||| || |||
Sbjct 1336805 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCCTCCGCGG----CCAGCT 1336860
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | | | || | | ||||||||||||||||||||||||||||||
Sbjct 1336861 TCTTAGAGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 1336920
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 1336921 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTACCGCC 1336980
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||||||
Sbjct 1336981 TTGGCCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCA 1337040
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 1337041 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 1337100
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 1337101 GTCCCTGCCCTTTGTA 1337116
>seq10
Length=3646474
Score = 306 bits (338), Expect = 7e-81
Identities = 258/316 (82%), Gaps = 11/316 (3%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | ||| | | |||| || |||
Sbjct 3330100 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCCTCCGCGG----CCAGCT 3330155
Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | | | || | | ||||||||||||||||||||||||||||||
Sbjct 3330156 TCTTAGAGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 3330215
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 3330216 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTACCGCC 3330275
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||||||
Sbjct 3330276 TTGGCCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCA 3330335
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 3330336 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 3330395
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 3330396 GTCCCTGCCCTTTGTA 3330411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947191513088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |