Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq321 187 8e-45
seq234 187 8e-45
seq208 187 8e-45
seq132 138 4e-30
seq188 127 7e-27
seq53 107 6e-21
>seq321
Length=132638
Score = 187 bits (206), Expect = 8e-45
Identities = 323/462 (70%), Gaps = 27/462 (6%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 107624 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 107683
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 107684 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 107743
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 107744 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 107801
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266
| || | | ||||||||||| |||||||| | |||| || ||||||||
Sbjct 107802 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 107861
Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320
|| | ||||||||||| | |||| || ||| || || | |||||
Sbjct 107862 CCCAGGGAAACTCCGAATACAGGCCGTCATCGTTTGTAC----AGACAGACTTCTTGGGT 107917
Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380
|||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 107918 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 107977
Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438
|| ||| || || |||| |||| || | |||| | |||| || ||||||||||
Sbjct 107978 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 108033
Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
|||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 108034 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 108074
>seq234
Length=218985
Score = 187 bits (206), Expect = 8e-45
Identities = 398/586 (68%), Gaps = 44/586 (8%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||||
Sbjct 73078 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 73019
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 73018 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 72959
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 72958 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 72899
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| |||||| |||||||||
Sbjct 72898 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 72844
Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295
|| ||| | | ||| ||||||| | |||||||| |||| | | |
Sbjct 72843 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATAC---TAGATA 72789
Query 296 TTACCGC---------GGG-------------AGTGAGGGCATGGGTGCTAAGGTCCGTG 333
| ||| | ||| |||||| ||||| | |||| | | |
Sbjct 72788 TGACCCCAAAAAAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATC 72729
Query 334 CCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAAC 393
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | |
Sbjct 72728 GTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA- 72670
Query 394 TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAA 453
|| || || | ||| ||||||| |||| ||| || | |||||||||| | || ||
Sbjct 72669 -AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAA 72612
Query 454 AGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGT 513
||||||||||| |||||||| ||||| || ||| || || | |||| ||||
Sbjct 72611 AGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGC 72553
Query 514 TGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 72552 GATCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 72508
>seq208
Length=245570
Score = 187 bits (206), Expect = 8e-45
Identities = 323/462 (70%), Gaps = 27/462 (6%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 202858 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 202799
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 202798 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 202739
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 202738 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 202681
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266
| || | | ||||||||||| |||||||| | |||| || ||||||||
Sbjct 202680 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 202621
Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320
|| | ||||||||||| | |||| || ||| || || | |||||
Sbjct 202620 CCCAGGGAAACTCCGAATACAGGCCGTCATCGTTTGTAC----AGACAGACTTCTTGGGT 202565
Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380
|||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 202564 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 202505
Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438
|| ||| || || |||| |||| || | |||| | |||| || ||||||||||
Sbjct 202504 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 202449
Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
|||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 202448 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 202408
>seq132
Length=622545
Score = 138 bits (152), Expect = 4e-30
Identities = 142/186 (76%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||||
Sbjct 347262 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 347203
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 347202 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 347143
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 347142 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 347083
Query 182 CCGAAA 187
||||||
Sbjct 347082 CCGAAA 347077
>seq188
Length=392610
Score = 127 bits (140), Expect = 7e-27
Identities = 117/147 (80%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 392464 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 392523
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 392524 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 392583
Query 154 AAACAAACTTGGAAATAGCTGGTTCTC 180
|| ||| | ||| |||||||||| ||
Sbjct 392584 AACCAAGATCGGATATAGCTGGTTTTC 392610
>seq53
Length=1478458
Score = 107 bits (118), Expect = 6e-21
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107
|||||||| ||||| ||||||||||| | ||||| || ||||||||||||||||||
Sbjct 852717 GTGATCTATCCATGACCAGGATGAAGCTTGGGTAAAACTAAGTGGAGGTCCGAACCCACT 852776
Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAAC 161
|||||||| ||| || ||||||| |||| |||||| |||| || | |||||
Sbjct 852777 GATGTTGAAGAATCAGCGGATGAGTTGTGCTTAGGGGCGAAATGCCACTCAAAC 852830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689584861184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |