Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq27 96.9 3e-15 seq59 84.2 2e-11 seq2 84.2 2e-11 >seq27 Length=2003651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| ||| |||||| |||||||| |||||||| || || |||| Sbjct 1229363 TGTTCCCGATCAAGTACCCGGAAATTTGGGAAATGTACAAGAAGGCGGAGGCGTCTTTCT 1229304 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG--GAGCGT--TTATCG 61179 |||||| |||||||||||||||||| | || || ||||| |||| | | || Sbjct 1229303 GGACGGCGGAGGAGGTCGATTTGTCGCAGGATTTGGTCCACTGGACCGGCGTCCTCACCG 1229244 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 || || | ||||| || | ||||| | || ||||| ||||| || ||||| ||| Sbjct 1229243 -CCGACGAGCGCCATTTTATAACCTATGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 1229185 Query 61240 GTCAATGAGAA 61250 ||| ||||| Sbjct 1229184 GTCCTCGAGAA 1229174 >seq59 Length=1347071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| || |||||| |||||||| |||||||| || || |||| Sbjct 1072104 TGTTCCCGATCAAGTACCCTGAGATTTGGGAGATGTACAAGAAGGCGGAGGCGTCGTTCT 1072045 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG--GAGCGT--TTATCG 61179 |||| | |||||||||||||||||| | || || ||||| |||| | | || Sbjct 1072044 GGACCGCGGAGGAGGTCGATTTGTCGCAGGATTTGGTCCACTGGACCGGCGTCCTCACCG 1071985 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || || | ||||| || | | ||| | || ||||| ||||| || || || ||| Sbjct 1071984 A-CGACGAGCGCCATTTTATAACCTACGTGCTCGCCTTCTTCGCCGCCTCCGATGGCATC 1071926 Query 61240 GTCAATGAGAA 61250 ||| ||||| Sbjct 1071925 GTCCTCGAGAA 1071915 >seq2 Length=5918456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| || |||||| |||||||| |||||||| || || |||| Sbjct 904273 TGTTCCCGATCAAGTACCCTGAGATTTGGGAGATGTACAAGAAGGCGGAGGCGTCGTTCT 904332 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG--GAGCGT--TTATCG 61179 |||| | |||||||||||||||||| | || || ||||| |||| | | || Sbjct 904333 GGACCGCGGAGGAGGTCGATTTGTCGCAGGATTTGGTCCACTGGACCGGCGTCCTCACCG 904392 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || || | ||||| || | | ||| | || ||||| ||||| || || || ||| Sbjct 904393 A-CGACGAGCGCCATTTTATAACCTACGTGCTCGCCTTCTTCGCCGCCTCCGATGGCATC 904451 Query 61240 GTCAATGAGAA 61250 ||| ||||| Sbjct 904452 GTCCTCGAGAA 904462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563658557440