Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq321 455 4e-123 seq8 107 2e-18 seq43 86.0 7e-12 >seq321 Length=132638 Score = 455 bits (504), Expect = 4e-123 Identities = 481/632 (76%), Gaps = 1/632 (0%) Strand=Plus/Minus Query 159984 TCATC-TCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042 ||||| |||||||| || |||| |||| || || ||| | || ||||| || || Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC 160102 |||||||| ||||| | || |||||| | || || || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 160103 TTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGT 160162 | |||||| | | || | | || |||||||||||||||||||| || |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 160163 CTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCT 160222 || ||||||||||| ||||| ||||||||| || ||||| || || |||||| ||||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 160223 GTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160282 || ||| | ||||||| ||||||| || ||| || |||| ||||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 160283 TCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 160342 || |||||||| |||| ||| |||||||||| || || ||||| |||||||||||||| Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 160343 TTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGA 160402 ||||||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 160403 TCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGT 160462 || |||| || |||||| | |||| || || ||||||| || || || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 160463 TACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGT 160522 |||| ||||||||||||||||| |||||||| ||||| || || ||||| || || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 160523 CGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCT 160582 || ||||||||||||||||| || |||||||| || || || |||||||| | ||| Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 160583 GCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614 ||||||||||| || || |||||||||||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq8 Length=3569224 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 160334 ATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCT 160393 |||||||| ||||||||| | || || ||| |||||| || || ||| |||| Sbjct 2145667 ATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTGCT 2145720 Query 160394 ATGCATGGATCTC-TGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCA 160452 |||||| ||| || |||| || |||||| | ||| | | |||||||| ||| || Sbjct 2145721 ATGCAT-GATTTCTTGGTAACCTCTAGTTTTATCAAGAAAATGACAGAAAATGAATCTGC 2145779 Query 160453 GAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGT-----CGCAGCA 160507 || | ||||| | || |||||||||||||| |||||||| ||||| | | || Sbjct 2145780 TAATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCTGCT 2145839 Query 160508 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTC 160557 ||||| | ||| | || |||||||| |||||||| || |||||||| Sbjct 2145840 CATGG-TTGTTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 2145888 >seq43 Length=1752904 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 |||||||| ||||||||||| || ||||| || |||||||| || || ||| ||| || Sbjct 1240419 CCCTACTCGTGTCGTGCTGGGGCGTGCTCGACCTGTGCTGGAAAAATCGAGTCCGGTTCT 1240478 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATG--ATCAACTTGAATCAGGATTTGTCC 161125 || ||||| || ||| ||| ||||| || || | ||| | || || ||||| | Sbjct 1240479 GTTGATCAGTCCGATGGATCCTTCCTCGACGAAGGACTCATGTCAAA--GGGTTTTGTGC 1240536 Query 161126 TGACCTGCGTTGCTTATCCCACT 161148 | |||||||| || || |||||| Sbjct 1240537 TCACCTGCGTCGCGTACCCCACT 1240559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551369824588800