Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq321 414 1e-110 >seq321 Length=132638 Score = 414 bits (458), Expect = 1e-110 Identities = 480/638 (75%), Gaps = 13/638 (2%) Strand=Plus/Minus Query 189032 TCATC-TCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATC 189090 ||||| |||||||| || | ||| | || || || ||| | || |||||||| ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 189091 TGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTC 189150 |||||||| || || | ||||||||| | ||||| || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 189151 TTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTAC 189207 | |||||| | | || | || || | |||||||||||||||||||||| || | Sbjct 86932 CTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 86876 Query 189208 CGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATC 189266 ||||| ||||||||||||||||| ||| |||| || || || ||||||||||| || | Sbjct 86875 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 86817 Query 189267 CGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGG 189326 || || || || |||| ||| | |||||||| ||| ||||| | ||||| || || Sbjct 86816 TGCTGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGG 86757 Query 189327 --TATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 189384 |||||| | || ||||||| |||| |||| ||||| || |||||||||||||| ||| Sbjct 86756 AATATCAG--GTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATG 86699 Query 189385 CACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATG 189444 || || ||||||||| | ||||| || ||||| ||||| ||||| || ||| || ||| Sbjct 86698 CATCCATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 86639 Query 189445 CATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAAC 189504 |||||||| | || |||||| || | | |||||||| |||| ||| || || Sbjct 86638 CATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAAT 86579 Query 189505 TATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATAT 189564 | ||||||| || || ||||| |||||||| ||||| ||||| ||||||||||| ||| Sbjct 86578 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTAT 86519 Query 189565 TTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTC 189624 || || || | |||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 86518 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTT 86459 Query 189625 CTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGC 189662 | ||||| ||||| || || ||||||||||| || || Sbjct 86458 TTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634072898304000