Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 2e-13 seq40 87.8 2e-12 >seq14 Length=2986515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| ||||| ||||| || || ||| | ||| |||| |||| |||||||| || || || Sbjct 2442827 CGGCATTCTCTTCAACCATGAGAGCCCCCGCCGAGGCGAGAACTTCGTCACTCGTAAAAT 2442886 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 | ||| || | ||| || | | || | ||||| | || | ||||| || || Sbjct 2442887 CACCCGCGCGGTCGGCCGGATCAAGCTAGGTTTACAAAGAAAGCTGTACCTTGGCAATCT 2442946 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 | |||| || || ||||| ||| ||||| || |||||||||||| ||||||| Sbjct 2442947 CTCTGCCGCCCGCGATTGGGGGTTCGCAGGTGACTATGTGGAGGCTATGTGGATGATGCT 2443006 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 ||||| || |||| | ||||| || |||| |||| Sbjct 2443007 ACAGCAGGATGAGCCCGGCGATTACGTCGTCGCCACTG 2443044 >seq40 Length=1788910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| ||||| ||||| || || ||| | ||| |||| |||| |||||||| || || || Sbjct 974903 CGGCATTCTCTTCAACCATGAGAGCCC-CGCCGAGGCGAGAACTTCGTCACTCGTAAAAT 974845 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 | ||| || | ||| || | | || | ||||| | || | ||||| || || Sbjct 974844 CACCCGCGCGGTCGGCCGGATCAAGCTAGGTTTACAAAGAAAGCTCTACCTTGGCAATCT 974785 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 | |||| || || ||||| ||| ||||| || |||||||||||| ||||||| Sbjct 974784 CTCTGCCGCCCGCGATTGGGGGTTCGCAGGTGACTATGTGGAGGCTATGTGGATGATGCT 974725 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 ||||| || |||| | ||||| || |||| |||| Sbjct 974724 ACAGCAGGATGAGCCCGGCGATTACGTCGTCGCCACTG 974687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691451455656960