Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-16 seq10 87.8 2e-15 seq9 87.8 2e-15 seq7 87.8 2e-15 seq3 87.8 2e-15 seq267 82.4 8e-14 seq2 82.4 8e-14 seq4 80.6 3e-13 seq266 75.2 1e-11 >seq5 Length=223902240 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 109170021 TAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 109170080 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||||| || ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 109170081 G-GGTCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 109170136 >seq10 Length=150982314 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 48844663 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 48844722 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 48844723 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 48844771 >seq9 Length=159769782 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 3526634 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 3526575 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 3526574 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 3526526 >seq7 Length=182381542 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 46268132 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 46268191 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 46268192 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 46268240 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | |||||||||||||||| || |||| || | | ||| || Sbjct 46289114 TAAGGAACTCGACAAAATAGCCCTGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 46289055 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| || ||| |||||||| |||||||||||| || Sbjct 46289054 G-GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 46289006 >seq3 Length=235667834 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 96365312 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 96365371 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 96365372 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 96365420 >seq267 Length=140384 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 100837 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 100896 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| ||||| || |||||||||||| || Sbjct 100897 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTATACCAAAAACACAGGTCT 100945 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 121900 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 121841 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| ||||| || |||||||||||| || Sbjct 121840 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTATACCAAAAACACAGGTCT 121792 >seq2 Length=244442276 Score = 82.4 bits (90), Expect = 8e-14 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 ||||||||||| || | ||| || |||| ||| || ||| || | | | |||| Sbjct 86184847 AAACGGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 86184789 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||| |||| || |||| || | | ||| ||| || Sbjct 86184788 GAACTCGGCAAAATAGCCCCATAACTTTGGGAGAAGGGGTGCCC-CTCGCAAAAGGG-GG 86184731 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || |||||||||||| |||||||||||| || Sbjct 86184730 TCGCAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCT 86184685 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 98041198 TAAGGAACTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 98041257 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| ||||| || |||||||||||| || Sbjct 98041258 G-GGTCGCAGTGACAAGGCCCGGGCGACTGTGTACCAAAAACACAGGTCT 98041306 >seq4 Length=246994605 Score = 80.6 bits (88), Expect = 3e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 115203679 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 115203620 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| ||||||||||||||||||| || |||| Sbjct 115203619 GGAACTCGGCAAAATGACCCTGTAACTTCGGGAGAAGGGGT 115203579 >seq266 Length=569630 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 402529 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 402588 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 402589 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 402629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531198626018