Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-23 seq2 113 5e-23 seq267 107 2e-21 seq266 107 2e-21 seq7 107 2e-21 seq9 104 3e-20 seq5 104 3e-20 seq3 89.7 6e-16 seq1 87.8 2e-15 >seq4 Length=246994605 Score = 113 bits (124), Expect = 5e-23 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||||| Sbjct 115203242 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 115203301 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 115203302 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 115203361 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 115203362 GACAAGGAATTTCGCTACCTTAGGACAGTTA 115203392 Score = 86.0 bits (94), Expect = 7e-15 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| || ||| | |||||||||| || | | ||||||| ||| Sbjct 49670480 GGGTCTTTTTGTCCAGGTGCACGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAG 49670539 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| |||||| ||||| | |||| |||||||||| Sbjct 49670540 C-CTCTCTCCGAGACAGTGCCCAGATTGTTACACCTTTCGTACGAGTCGAAACTTACCCG 49670598 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||| ||||||||||||| ||| Sbjct 49670599 ACAAGGAATTTCACTACCTTAGGACCATTA 49670628 Score = 73.4 bits (80), Expect = 4e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 129 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 15969607 GTCGGAACTTACCCGACAAGGAATTTCTCTACCTTAGGACCATTA 15969563 >seq2 Length=244442276 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | || |||| || |||||||||| || | | ||||||| ||| Sbjct 86184412 GGGTCTTTCTGTCCAAGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 86184471 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 86184472 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 86184530 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 86184531 ACAAGGAATTTCGCTACCTTAGGACCGTTA 86184560 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 || ||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 98041579 GGATCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 98041520 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||||||| ||| || || |||| ||||| |||||||||| Sbjct 98041519 C-CTCTCTCTGAGACAGTGCCCAGATCGTTACGCCTTTTGTGCGGGTCGAAACTTACCCG 98041461 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| |||||||||||||||||| Sbjct 98041460 ACAAGGAATTTTGCTACCTTAGGACCGTTA 98041431 >seq267 Length=140384 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 101218 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 101159 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 101158 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 101100 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 101099 ACAAGGAATTTCGCTACCTTAGGACCGTTA 101070 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 121519 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 121578 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 121579 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 121637 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 121638 ACAAGGAATTTCGCTACCTTAGGACCGTTA 121667 >seq266 Length=569630 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 402966 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 402907 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 402906 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 402847 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 402846 GACAAGGAATTTCGCTACCTTAGGACAGTTA 402816 >seq7 Length=182381542 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 46268513 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 46268454 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 46268453 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 46268395 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 46268394 ACAAGGAATTTCGCTACCTTAGGACCGTTA 46268365 Score = 96.9 bits (106), Expect = 4e-18 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 46288735 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 46288794 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||||| |||||| ||||||| |||||||||||||||| Sbjct 46288795 C-CTCTCTCCGAGACATTGCCCAGATTGTTACACCTTTCGTGCGGGTCGGAACTTACCCG 46288853 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | ||||||||||||||||||||||||||| Sbjct 46288854 A--AGGAATTTCGCTACCTTAGGACCGTTA 46288881 >seq9 Length=159769782 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || ||||| |||| || | | ||||||| ||| Sbjct 3526253 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCGTCACAGACATGTCTATTTCACCGAG 3526312 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 3526313 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 3526371 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 3526372 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3526401 >seq5 Length=223902240 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 109170402 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 109170343 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||| ||||||||||| Sbjct 109170342 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCCG 109170284 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 109170283 ACAAGGAATTTCGCTACCTTAGGACCGTTA 109170254 >seq3 Length=235667834 Score = 89.7 bits (98), Expect = 6e-16 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| | | | ||||||| ||| Sbjct 96365693 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAAACATGTCTATTTCACCGAG 96365634 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||| |||||||||||||||| Sbjct 96365633 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 96365575 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||| ||||| ||||| Sbjct 96365574 ACAAGGAATTTCGCTACCCTAGGAACGTTA 96365545 >seq1 Length=307041717 Score = 87.8 bits (96), Expect = 2e-15 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| || |||| || ||||||||| || | | ||||||| |||| Sbjct 134046805 GGTCTTTCTGTCCAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTTCACCGAGC 134046864 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | ||||||| ||| || ||||||| ||||| |||||||| || Sbjct 134046865 -CTCTCTCCGAGACAGTGCCCAGATTGTTACGCCTTTCGTGCGGGTCGAAACTTACCTGA 134046923 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| ||| Sbjct 134046924 CAAGGAATTTCGCTACCTTAGGACCATTA 134046952 Score = 84.2 bits (92), Expect = 2e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167 || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 85817952 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 85817902 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 190529313 TTTGTGCGAGTCGGAACTTACCCGACAAAGAATTTCGCTACCTTAGGACCGTTA 190529260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198584633