Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq267 217 3e-54 seq266 217 3e-54 seq7 217 3e-54 seq1 217 3e-54 seq10 205 2e-50 seq2 199 8e-49 >seq267 Length=140384 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 95537 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 95479 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 95478 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 95419 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 95418 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 95369 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 127200 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 127258 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 127259 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 127318 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 127319 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 127368 >seq266 Length=569630 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 329144 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 329202 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 329203 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 329262 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 329263 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 329312 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 421092 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 421149 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 421150 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 421209 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 421210 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 421269 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 421270 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 421309 >seq7 Length=182381542 Score = 217 bits (240), Expect = 3e-54 Identities = 239/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || ||||||||||||||||||| || ||||||||||||| |||| Sbjct 46248180 CATGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTACCTC 46248122 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 46248121 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 46248062 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| || | Sbjct 46248061 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC-- 46248004 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || | | | ||| | || ||| || |||| | ||| |||| ||||||||| Sbjct 46248003 CTCCTTGGG--AGG-----ATTTCTCCT-TTTGCTCC--TCAGAC-TATGGGGTATTAGC 46247955 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 | |||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 46247954 AACTGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 46247897 Query 327 TCCGCCGCT 335 | |||| || Sbjct 46247896 TTCGCCACT 46247888 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 46262820 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 46262762 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 46262761 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 46262702 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 46262701 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 46262652 Score = 208 bits (230), Expect = 2e-51 Identities = 149/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||||||| |||||||| || |||||||||||||||||| Sbjct 18706005 CACGTGGCATTG-CTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 18706063 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 18706064 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 18706123 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 18706124 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 18706173 Score = 105 bits (116), Expect = 1e-20 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||||||| || |||||||||| ||||||| || |||||||||||||||||| Sbjct 18700998 CACGCGGCATTA-CTCCGTCAGGCTTTCCCCCATTGCGGAAAATTCCCCACTGCTGCCTC 18700940 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||||||||| ||||||||||| ||||| Sbjct 18700939 CCGTAGGAGTCTGGGCCGTGTCTCAGCCCCAGT 18700907 Score = 100 bits (110), Expect = 6e-19 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| |||||||| | | ||| || ||||| || ||||||||||||||| Sbjct 5840180 TTGACGACCCGTAGACCTTCCACCTC-CACACGACATTG-CTCCGTCAGGCTTTCGCCCA 5840237 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| || |||||| |||||||||||| || ||| |||| | ||| Sbjct 5840238 TTGCGGAAAATTCCTCATGATTGCCTCATGTAGGAGTCTGGCCCATGTTCCAGTCCAAGT 5840297 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTC 158 ||| ||||||||||| || ||||| ||| |||| || Sbjct 5840298 GTGGCTGATCATCCTTTCGTACCAGCTACTGATCATC 5840334 >seq1 Length=307041717 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 56684500 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 56684558 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 56684559 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 56684618 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 56684619 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 56684668 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 15413966 CACACGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 15414024 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 15414025 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 15414084 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 15414085 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 15414134 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 25984524 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 25984581 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 25984582 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 25984641 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 25984642 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 25984701 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 25984702 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 25984741 Score = 96.9 bits (106), Expect = 7e-18 Identities = 111/149 (74%), Gaps = 13/149 (9%) Strand=Plus/Minus Query 45 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGAC 104 || ||||||||||| |||||| || ||| |||| || ||||||| |||||||| ||| Sbjct 10577664 GACCAGGCTTTCGCGCATTGTTGAAAATTTCCCATTGATGCCTCCTGTAGGAGTTTGGGT 10577605 Query 105 CGTGTCTCAGTTCCAGT--GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCT 162 |||| || | | ||| || |||||||| |||| |||||| | ||| || Sbjct 10577604 CGTGCCTTATT---AGTCGCTGGCTGATCATTCTCTTGGACCAG--------CTTCGTCT 10577556 Query 163 TGGTGAGCCATTACCTCACCAACTAGCTA 191 |||| ||| ||| |||||||||||||||| Sbjct 10577555 TGGTAAGCTATTGCCTCACCAACTAGCTA 10577527 >seq10 Length=150982314 Score = 205 bits (226), Expect = 2e-50 Identities = 148/170 (87%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 48831567 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 48831625 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||| | |||||||| |||||||||||||| |||||| | Sbjct 48831626 CCGTAGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 48831685 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| || ||| ||||| ||||||||||||| ||| Sbjct 48831686 ACTGATCATCGCCTTGGTATGCTATTGCCTCAACAACTAGCTAATCAGAC 48831735 >seq2 Length=244442276 Score = 199 bits (220), Expect = 8e-49 Identities = 147/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || |||||||||||||||||||| || |||||||||| ||||||| Sbjct 98047025 CACACGGCATTG-CTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTACTGCCTC 98046967 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| ||||||||||| ||||||| |||||||||||||| |||||| | Sbjct 98046966 CCATAGGAGTCTGGGTCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGACCAGCT 98046907 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| ||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 98046906 ACTGATCATCGCCTTGGCAAGCTATTGCCTCACCAACTAGCTAATCAGAC 98046857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071997137760