Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq7 123 5e-26 seq1 123 5e-26 seq10 118 2e-24 seq2 114 2e-23 seq267 113 8e-23 seq6 105 1e-20 seq4 105 1e-20 seq266 98.7 2e-18 seq8 75.2 2e-11 >seq7 Length=182381542 Score = 123 bits (136), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 46266375 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 46266434 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 46266435 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 46266486 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 46266487 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 46266545 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 46266546 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 46266605 Query 249 CCT 251 ||| Sbjct 46266606 CCT 46266608 >seq1 Length=307041717 Score = 123 bits (136), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 199418280 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 199418339 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 199418340 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 199418391 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 199418392 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 199418450 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 199418451 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 199418510 Query 249 CCT 251 ||| Sbjct 199418511 CCT 199418513 Score = 120 bits (132), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 34 CGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCC 93 ||| ||||| ||||| | ||| | ||| |||||||| | ||| | | | ||||| Sbjct 237902591 CGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCATAGATCC 237902533 Query 94 GCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTA 153 | ||||| || ||| || |||| |||| | ||| |||||||| ||| | | Sbjct 237902532 GGAGATTCCCAAATAGGTCAACCT-----TTTGA---ACTGCCTGCTGAATCCATGAGCA 237902481 Query 154 TGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCG 212 |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| | Sbjct 237902480 GGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAG 237902421 Query 213 AGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||| ||||| |||||||||||||||| ||||| Sbjct 237902420 CGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAGCCT 237902382 >seq10 Length=150982314 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 48842907 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 48842966 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| | |||| |||| Sbjct 48842967 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGCTCAACCT-----TTTGA-- 48843018 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 ||||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 48843019 -ATTGCCTGCTGAATCCATGAGCACGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 48843077 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| || |||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 48843078 AGCCAGAGCAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 48843137 Query 249 CCT 251 ||| Sbjct 48843138 CCT 48843140 >seq2 Length=244442276 Score = 114 bits (126), Expect = 2e-23 Identities = 173/243 (71%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || | | ||||| ||||| | ||| | ||| ||| Sbjct 86186522 GGTGGATACCTAGGCACCCAGAGACAAGGAAGGGCGTAGCAAGCGACGAAATGCTTTGGG 86186463 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 86186462 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 86186411 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 86186410 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 86186352 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 86186351 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 86186292 Query 249 CCT 251 ||| Sbjct 86186291 CCT 86186289 >seq267 Length=140384 Score = 113 bits (124), Expect = 8e-23 Identities = 174/244 (71%), Gaps = 11/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAG-GACGTAGTAGCTTGCGATAAGCTGCGG 68 ||||||| ||| ||| | || ||| |||| | ||||| | ||| | ||| ||| Sbjct 99083 GGTGGATACCTAGGCACCCAGAGACGAGGAAGAGGCGTAGCAAGCGACGAAATGCTTCGG 99142 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 99143 GGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA- 99195 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| ||| |||| ||| | | |||| || ||| ||||||||||||||||| || Sbjct 99196 --ACTGCCTGCCGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAG 99253 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| | Sbjct 99254 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCA 99313 Query 248 GCCT 251 |||| Sbjct 99314 GCCT 99317 Score = 113 bits (124), Expect = 8e-23 Identities = 174/244 (71%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAG-GACGTAGTAGCTTGCGATAAGCTGCGG 68 ||||||| ||| ||| | || ||| |||| | ||||| | ||| | ||| ||| Sbjct 123654 GGTGGATACCTAGGCACCCAGAGACGAGGAAGAGGCGTAGCAAGCGACGAAATGCTTCGG 123595 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 123594 GGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA- 123542 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| ||| |||| ||| | | |||| || ||| ||||||||||||||||| || Sbjct 123541 --ACTGCCTGCCGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAG 123484 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| | Sbjct 123483 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCA 123424 Query 248 GCCT 251 |||| Sbjct 123423 GCCT 123420 >seq6 Length=174033170 Score = 105 bits (116), Expect = 1e-20 Identities = 123/164 (75%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| || ||| || |||| |||| | ||| |||||||| ||| Sbjct 81288122 GATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA---ACTGCCTGCTGAATCCAT 81288173 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 | | |||| || ||| ||||||||||||||||| |||||| ||||||||||| | Sbjct 81288174 GAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGC 81288233 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| |||||||||||||||| ||||| Sbjct 81288234 AAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 81288277 Score = 105 bits (116), Expect = 1e-20 Identities = 123/164 (75%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| || ||| || |||| |||| | ||| |||||||| ||| Sbjct 81473453 GATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA---ACTGCCTGCTGAATCCAT 81473504 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 | | |||| || ||| ||||||||||||||||| |||||| ||||||||||| | Sbjct 81473505 GAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGC 81473564 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| |||||||||||||||| ||||| Sbjct 81473565 AAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 81473608 >seq4 Length=246994605 Score = 105 bits (116), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 113427689 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 113427630 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||||| ||||| || ||| || |||| ||| | Sbjct 113427629 GAGTT-GAAAATAAGCATAGATCCAGAGATTCCCAAATAGGTCAACC------TTTAGAA 113427577 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 113427576 C--TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 113427519 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||||||| ||| | |||||| ||||| ||||||| |||||||| Sbjct 113427518 AGCCAGAGGAAAAGAAAGCAAAAGCAATTCCCGTAGTAGCGGCGAGCAAAATGGGA 113427463 Score = 73.4 bits (80), Expect = 7e-11 Identities = 164/243 (67%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || | | ||||| ||||| | | ||| | ||| | || Sbjct 49672622 GGTGGATACCTAGGCACCCAGAGACAAGGAAGGGCGTAGCAAGTGACGAAATGCTTCAGG 49672563 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | || ||| ||||| || ||| || |||| |||| Sbjct 49672562 GAGTT-GAAAATAAGCATAGACCCGGAGATTCCCAAATAGGTGAACCT-----TTTGA-- 49672511 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||||| ||| | | | || || ||| || || |||||||||| ||| Sbjct 49672510 -ACTACCTGCTGAATCCATGAGCAGGAAAGAGACAACCTAGCAAATTGAAACATCTTAGT 49672452 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| |||| |||||| | | | |||||| ||||| | |||||||||||||| || Sbjct 49672451 AGCCAGAGGACAAGAAAGCCAAAGTGATTCCTGTAGTAGCGACGAGCGAAATGGGAGCAG 49672392 Query 249 CCT 251 ||| Sbjct 49672391 CCT 49672389 >seq266 Length=569630 Score = 98.7 bits (108), Expect = 2e-18 Identities = 175/254 (69%), Gaps = 21/254 (8%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 75690 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 75631 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 75630 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 75579 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 75578 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 75520 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTC-----------CCAAAGTAGTGGCGAGCGA 237 ||| ||||||||||| ||| | ||||| || ||||| ||||||||| Sbjct 75519 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTACCCGTACCGTAGTAGCGGCGAGCGA 75460 Query 238 AATGGGATGAGCCT 251 ||||||| ||||| Sbjct 75459 AATGGGAGCAGCCT 75446 >seq8 Length=181122637 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| ||||||||||||| || |||||| Sbjct 61494531 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGT 61494590 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 61494591 GGCGAGCGA 61494599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918397547872