Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 165 6e-36 seq9 145 6e-30 >seq6 Length=174033170 Score = 165 bits (182), Expect = 6e-36 Identities = 550/844 (65%), Gaps = 25/844 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | || ||| Sbjct 122042625 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTCTCTGCCGACGCC 122042684 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | || || || | || ||||| || ||| | || Sbjct 122042685 CGGCACTGGGACGAGGCGCTG-TCCCCCGACGAGCGCCACTTCATCTCTCACGTGCTCGC 122042743 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| ||||| | | || ||| | || Sbjct 122042744 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCCGA 122042803 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | |||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 122042804 CGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 122042863 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||||||||||||| | || |||| || |||||| | || | | || | | || | Sbjct 122042864 CTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG-GACC 122042922 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||| ||| | || ||||| ||| || ||||| |||||| | Sbjct 122042923 GCCTCTTCCGCGCCATCGATACGGTGCCCGCGGTCCGGCGCAAGGCGGACTGGGCCATGC 122042982 Query 61454 ATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| || ||| | || | || || | | || || || || Sbjct 122042983 GCTGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGT 122043037 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||||||| ||||||| || || || Sbjct 122043038 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCT 122043097 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| ||| ||| | || || |||||||||||| |||| || || Sbjct 122043098 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 122043157 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATC--GTCCGTCGGAGGAGCGTGTG 61689 ||| || | || || ||| | || | | | | || | |||| || ||| Sbjct 122043158 TTTCGC---CTGCCTCCTC-TACGATGTCCTACGCAGCAAGCTCGAC-GAGGCCCGCGTG 122043212 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 | ||| || ||| || || ||||| | || || |||| ||||| | | Sbjct 122043213 CGCACGATCGTCGCTGACGCCGTCGACATCGAGCGCGAGTTCGTCTG--CGACGCCCTCC 122043270 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | ||||| ||| |||||||||| | | || ||| ||||| || || || || |||| Sbjct 122043271 CTGTCTCCCTCGTCGGCATGAACGGGGACCTCATGAGCCAGTACATCGAGTTCGTGGCCG 122043330 Query 61808 ACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 |||| ||| | | | | || ||| ||| || || || ||||| || || | Sbjct 122043331 ACCGCCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTGACCAACCCCTTCGACT 122043390 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| | || |||||| | || ||||| || || |||||||| || || || |||| Sbjct 122043391 GGATGGAGCTCATCTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACT 122043450 Query 61928 ATCA 61931 | || Sbjct 122043451 ACCA 122043454 >seq9 Length=159769782 Score = 145 bits (160), Expect = 6e-30 Identities = 543/842 (64%), Gaps = 21/842 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| ||||||||| || | || ||| Sbjct 30986925 TACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTTGACCTCTCTGCCGACGCC 30986984 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | || || || | || ||||| || ||| | || Sbjct 30986985 CGGCACTGGGACGAGGCGCTG-TCCCCCGACGAGCGGCACTTCATCTCCCACGTGCTCGC 30987043 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| || || || ||||| ||||| ||||| | || ||| | || Sbjct 30987044 CTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCCCGCTTCATGACCGA 30987103 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | |||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 30987104 CGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 30987163 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 |||||||||||| | || |||| || |||||| | || | | || || || Sbjct 30987164 CTCGGAGATGTATTCGCTGCTGCTCGAGACCTACATCCGCGACCACGTCGAGAAGGACCG 30987223 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| |||||||| || | || ||||| ||| || || || |||||| | Sbjct 30987224 CCTGTTCCGCGCCATCGACACCGTGCCCGCGGTCCGGCGCAAGGCTGACTGGGCCATGCG 30987283 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| || ||| | || | ||| || | | || || || ||| Sbjct 30987284 CTGGATC-----GACGGCGGGGAGCGCTTCGCTGAGCGCATCGTTGCCTTCGCCTGCGTC 30987338 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| |||| ||| || || || ||| ||||| ||| | ||||| || || || Sbjct 30987339 GAGGGCATATTCTTCTCGGGGTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTC 30987398 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || |||||| ||| ||| | || || ||||| |||||| | || |||||| Sbjct 30987399 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTCCACTGTGAT 30987458 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCT-GGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || | || | | | ||| ||| | | | || | |||| || || | Sbjct 30987459 TTCGCCTGCCTCCTCTACGA--GCT-TCTCCGCAACAAGCTCGAC-GAGGCCCGCGTACG 30987514 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCC 61749 ||||| || || || || ||||| | || || |||| ||||| | || Sbjct 30987515 CGAGATCGTCGCAGACGCTGTCGACATCGAGCGCGAGTTCGTCTG--CGACGCCCTCCCT 30987572 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 ||| | ||| |||||||||| | | || ||| ||||| |||||||| || |||||| Sbjct 30987573 GTCGCGCTCGTCGGCATGAACGGGGATCTCATGAGCCAGTACATTGAATTCGTGGCCGAC 30987632 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 || ||| | | | | || ||| ||| || || || || || || || | Sbjct 30987633 CGCCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTGACCAATCCCTTCGACTGG 30987692 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | || |||||| || ||||| || || |||||||| || || || ||||| Sbjct 30987693 ATGGAGCTCATCTCGCTGATGGGGAAGACCAACTTCTTCGAGAAGCGCGTGGGTGACTAC 30987752 Query 61930 CA 61931 || Sbjct 30987753 CA 30987754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566706288880