Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 77.0 6e-12
seq203 77.0 6e-12
>seq1114
Length=1590138
Score = 77.0 bits (84), Expect = 6e-12
Identities = 101/139 (73%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAGGAC 255
||||||| |||||| ||| ||||||||||||| || |||| | ||||||||
Sbjct 1025231 CGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGAC 1025172
Query 256 CGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATC 315
|||||| | || | ||| | |||||||| | || ||||||||||||||||| |
Sbjct 1025171 CGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACC 1025112
Query 316 AAACTGGGAAATAGCTCGT 334
|| | ||| |||||| ||
Sbjct 1025111 AAGATCGGATATAGCTGGT 1025093
>seq203
Length=971741
Score = 77.0 bits (84), Expect = 6e-12
Identities = 208/309 (67%), Gaps = 11/309 (4%)
Strand=Plus/Plus
Query 17 GTGAAATAGACCCTGAACCC-GC-GCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74
|||||||||| | |||||| || | | ||||| || |||| |||||| | |||
Sbjct 757328 GTGAAATAGAACGTGAACCGTGCTGAGGTCCCAAGCAGTGGGAGGAAAGTGAT-CTCTGA 757386
Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG--C 132
| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| |
Sbjct 757387 CCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGGAAC 757445
Query 133 TTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTA 192
| | | ||||| || ||||||||| ||| | ||||||| || || |
Sbjct 757446 GGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTTATG 757504
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGATGG 250
||| |||| | |||||||| ||| || |||| ||||| | | | ||| | |
Sbjct 757505 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA--G 757562
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| |||||||| | |||||| | | ||||||| | | || ||||||||||| ||
Sbjct 757563 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 757622
Query 311 CAATCAAAC 319
|| || |||
Sbjct 757623 CACTCGAAC 757631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972756009984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |