Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1114 77.0 6e-12 seq203 77.0 6e-12 >seq1114 Length=1590138 Score = 77.0 bits (84), Expect = 6e-12 Identities = 101/139 (73%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAGGAC 255 ||||||| |||||| ||| ||||||||||||| || |||| | |||||||| Sbjct 1025231 CGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGAC 1025172 Query 256 CGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATC 315 |||||| | || | ||| | |||||||| | || ||||||||||||||||| | Sbjct 1025171 CGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACC 1025112 Query 316 AAACTGGGAAATAGCTCGT 334 || | ||| |||||| || Sbjct 1025111 AAGATCGGATATAGCTGGT 1025093 >seq203 Length=971741 Score = 77.0 bits (84), Expect = 6e-12 Identities = 208/309 (67%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCC-GC-GCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74 |||||||||| | |||||| || | | ||||| || |||| |||||| | ||| Sbjct 757328 GTGAAATAGAACGTGAACCGTGCTGAGGTCCCAAGCAGTGGGAGGAAAGTGAT-CTCTGA 757386 Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG--C 132 | |||||||| ||| | |||||||| ||| | | | | || || ||||||||| | Sbjct 757387 CCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGGAAC 757445 Query 133 TTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTA 192 | | | ||||| || ||||||||| ||| | ||||||| || || | Sbjct 757446 GGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTTATG 757504 Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGATGG 250 ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | | Sbjct 757505 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA--G 757562 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 757563 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 757622 Query 311 CAATCAAAC 319 || || ||| Sbjct 757623 CACTCGAAC 757631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972756009984