Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1592 354 1e-95 seq2668 333 4e-89 seq2130 262 6e-68 seq479 181 2e-43 seq962 134 2e-29 >seq1592 Length=693907 Score = 354 bits (392), Expect = 1e-95 Identities = 236/257 (92%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 471389 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 471446 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 471447 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 471506 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||| |||| |||||||| Sbjct 471507 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTATAGCACGCGTGCG 471566 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 471567 ATCCAAAACATCTAAGGGCATTATATACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 471626 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 471627 GGCCATAGTCCCTCTAA 471643 Score = 327 bits (362), Expect = 2e-87 Identities = 230/257 (89%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||| | Sbjct 500501 GTACAAAGGGCAGGGACGTAGTCAACACGAGCT-GATGACTCGTGCTTACTAGGCATT-C 500558 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||||||||||||| |||||||||||| | ||||||||||| |||||| Sbjct 500559 CTCGTTGAAGATCAACAATTGCAATAATCTATCCCCATTATGATGAAATTTCCCAAGATT 500618 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | | ||||| |||| ||| ||||||||||| |||||||||||| |||||| | Sbjct 500619 ACCCAGGCTTATCGGCAAAGGCTATATACTCGTTGAATGCATCAGTGTAGCACGCGTGTG 500678 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500679 GCTCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 500738 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 500739 GGCCATAGTCCCTCTAA 500755 >seq2668 Length=1368154 Score = 333 bits (368), Expect = 4e-89 Identities = 231/257 (90%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| | Sbjct 673406 GTACAAAGGGCAGGGACGTAGTCAACACGAGCT-GATGACTCGCGCTTACTAGGCATT-C 673349 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || |||||||||||||||||||||||||||||||||| |||||| |||||| |||||| Sbjct 673348 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCACCACGATACAATTTCCCAAGATT 673289 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||| |||||| ||| |||| ||||||||||||||||||| | | |||| Sbjct 673288 ACCCGGGCCTGTCAGCCAAGACTATATACTCATTGAATACATCAGTGTAGCACACTTGCG 673229 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673228 GCCTGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 673169 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 673168 GGCCATAGTCCCTCTAA 673152 >seq2130 Length=13169 Score = 262 bits (290), Expect = 6e-68 Identities = 198/229 (86%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 12599 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 12542 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | | |||||| Sbjct 12541 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGGCTAACAAGATT 12482 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| |||||||||| ||||| ||| | ||||||||||||||||||| Sbjct 12481 ACCCGGGCCTTTCGGCCAAGGA-----ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCG 12427 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12426 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 12378 >seq479 Length=22593 Score = 181 bits (200), Expect = 2e-43 Identities = 178/224 (79%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| | Sbjct 21900 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 21957 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116 |||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| | Sbjct 21958 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 22014 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173 |||||| ||| |||| ||| | ||| | || ||| || |||||||||| || Sbjct 22015 GTTACCCACTCCTTTCGGAGCAGGAAACAGAATGCACGATGACCACTTCAGTGTAGCACG 22074 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 22075 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 22118 >seq962 Length=23983 Score = 134 bits (148), Expect = 2e-29 Identities = 170/227 (75%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||||||||||| ||||||| ||| | ||||||| | |||| ||||| ||| Sbjct 21882 GTACAAGGGGCAGGGACGTATTCAACGCAAGC-TAATGACTCACATTTACAAGGAA-TTC 21939 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || | | ||| ||| | || ||||| || || ||||||||||| Sbjct 21940 CTCGTTCATGAACTAAGATTACAAAGCTCAATCCCAGAGGTGAAAGAAATTCAAAGATTA 21999 Query 121 CCCG-GACCTGTCGGCCAAGG-----TGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 |||| |||| ||||| ||| ||| |||| ||| | ||| |||||| ||| Sbjct 22000 CCCGTAACCTTTCGGCACAGGAAATTAAATAAACTCATTGTCTCTTTCAATGTAGCTCGC 22059 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CCTC 220 |||||||||| | ||| |||||||| ||||||||||||||| |||| Sbjct 22060 GTGCGGCCCAAGATATCAAAGGGCAT-ACAGACCTGTTATTGTCCTC 22105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751967057230