Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1592 354 1e-95
seq2668 333 4e-89
seq2130 262 6e-68
seq479 181 2e-43
seq962 134 2e-29
>seq1592
Length=693907
Score = 354 bits (392), Expect = 1e-95
Identities = 236/257 (92%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 471389 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 471446
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 471447 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 471506
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||||||||||| ||| ||||||||||||||||||| |||| ||||||||
Sbjct 471507 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTATAGCACGCGTGCG 471566
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 471567 ATCCAAAACATCTAAGGGCATTATATACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 471626
Query 240 GGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 471627 GGCCATAGTCCCTCTAA 471643
Score = 327 bits (362), Expect = 2e-87
Identities = 230/257 (89%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||| |
Sbjct 500501 GTACAAAGGGCAGGGACGTAGTCAACACGAGCT-GATGACTCGTGCTTACTAGGCATT-C 500558
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||||||||||||| |||||||||||| | ||||||||||| ||||||
Sbjct 500559 CTCGTTGAAGATCAACAATTGCAATAATCTATCCCCATTATGATGAAATTTCCCAAGATT 500618
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | | | ||||| |||| ||| ||||||||||| |||||||||||| |||||| |
Sbjct 500619 ACCCAGGCTTATCGGCAAAGGCTATATACTCGTTGAATGCATCAGTGTAGCACGCGTGTG 500678
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500679 GCTCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 500738
Query 240 GGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 500739 GGCCATAGTCCCTCTAA 500755
>seq2668
Length=1368154
Score = 333 bits (368), Expect = 4e-89
Identities = 231/257 (90%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
Sbjct 673406 GTACAAAGGGCAGGGACGTAGTCAACACGAGCT-GATGACTCGCGCTTACTAGGCATT-C 673349
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 673348 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCACCACGATACAATTTCCCAAGATT 673289
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||| |||||| ||| |||| ||||||||||||||||||| | | ||||
Sbjct 673288 ACCCGGGCCTGTCAGCCAAGACTATATACTCATTGAATACATCAGTGTAGCACACTTGCG 673229
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673228 GCCTGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 673169
Query 240 GGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 673168 GGCCATAGTCCCTCTAA 673152
>seq2130
Length=13169
Score = 262 bits (290), Expect = 6e-68
Identities = 198/229 (86%), Gaps = 8/229 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 12599 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 12542
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | | ||||||
Sbjct 12541 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGGCTAACAAGATT 12482
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| |||||||||| ||||| ||| | |||||||||||||||||||
Sbjct 12481 ACCCGGGCCTTTCGGCCAAGGA-----ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCG 12427
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12426 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 12378
>seq479
Length=22593
Score = 181 bits (200), Expect = 2e-43
Identities = 178/224 (79%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| |
Sbjct 21900 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 21957
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116
|||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| |
Sbjct 21958 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 22014
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173
|||||| ||| |||| ||| | ||| | || ||| || |||||||||| ||
Sbjct 22015 GTTACCCACTCCTTTCGGAGCAGGAAACAGAATGCACGATGACCACTTCAGTGTAGCACG 22074
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct 22075 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 22118
>seq962
Length=23983
Score = 134 bits (148), Expect = 2e-29
Identities = 170/227 (75%), Gaps = 10/227 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||| ||||||||||||| ||||||| ||| | ||||||| | |||| ||||| |||
Sbjct 21882 GTACAAGGGGCAGGGACGTATTCAACGCAAGC-TAATGACTCACATTTACAAGGAA-TTC 21939
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| | || | | ||| ||| | || ||||| || || |||||||||||
Sbjct 21940 CTCGTTCATGAACTAAGATTACAAAGCTCAATCCCAGAGGTGAAAGAAATTCAAAGATTA 21999
Query 121 CCCG-GACCTGTCGGCCAAGG-----TGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
|||| |||| ||||| ||| ||| |||| ||| | ||| |||||| |||
Sbjct 22000 CCCGTAACCTTTCGGCACAGGAAATTAAATAAACTCATTGTCTCTTTCAATGTAGCTCGC 22059
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CCTC 220
|||||||||| | ||| |||||||| ||||||||||||||| ||||
Sbjct 22060 GTGCGGCCCAAGATATCAAAGGGCAT-ACAGACCTGTTATTGTCCTC 22105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751967057230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |