Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 410 2e-112
seq1592 172 1e-40
seq3413 149 1e-33
>seq2130
Length=13169
Score = 410 bits (454), Expect = 2e-112
Identities = 280/314 (89%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || ||| |||||||||||| ||| ||||||
Sbjct 11646 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATACCCTTCACTGGGCGTGGCGGGGA 11705
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||| ||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 11706 AACAGGACATTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 11765
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 11766 TAGCATGGAATAATAAAATAGGACGCGCGGTTCTATTTTGTTGGTTTATAGGACCGCCGT 11825
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||
Sbjct 11826 AATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGG 11885
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|| |||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 11886 ATCAGTTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGA 11944
Query 305 ACGAAAGTTAGGGG 318
||||||||| ||||
Sbjct 11945 ACGAAAGTTGGGGG 11958
>seq1592
Length=693907
Score = 172 bits (190), Expect = 1e-40
Identities = 139/167 (83%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211
|||| ||||| |||||| | ||| || ||||||||||||||||| |||||||||
Sbjct 472203 CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCA 472144
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271
| ||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 472143 TTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAA 472084
Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| || |||||||||||||||||||||| ||||||||||| ||||
Sbjct 472083 GCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 472038
Score = 141 bits (156), Expect = 2e-31
Identities = 131/165 (79%), Gaps = 1/165 (1%)
Strand=Plus/Minus
Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|| ||||| |||| | | ||||| ||| ||||||||||||||||| | | || | |
Sbjct 501313 GTCCTATTGTGTTAGCCTTTAGGATCGCAGTAATGATTAATAGGGACACCCATGGATATT 501254
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|||| || ||||||| ||||||||||||||||| ||||| ||| ||| |||||||
Sbjct 501253 CATATTTCATAGTCAGAGACGAAATTCTTGGATTTATGAAAGACGAACAACTACGAAAGC 501194
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 501193 ATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 501150
>seq3413
Length=1400
Score = 149 bits (164), Expect = 1e-33
Identities = 151/193 (78%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185
|||||||||||| ||||||||| | ||||||||||||||||| | || | || |||
Sbjct 261 GCATGGAATAATGGAATAGGACCTT-GGTTCTATTTTGTTGGTCTTAAGAATCCAAGGTA 203
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 202 ATGATTAAGAGGGACAGACGGGGGCATTTGTATTGCGGCGCTAGAGGTGAAATTCTTGGA 143
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
||||| |||||| |||||||| || ||||| |||||||||||||||| |||
Sbjct 142 CCGTCGCAAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 84
Query 306 CGAAAGTTAGGGG 318
|||||||||| ||
Sbjct 83 CGAAAGTTAGAGG 71
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915158614656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |