Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2130 410 2e-112 seq1592 172 1e-40 seq3413 149 1e-33 >seq2130 Length=13169 Score = 410 bits (454), Expect = 2e-112 Identities = 280/314 (89%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || ||| |||||||||||| ||| |||||| Sbjct 11646 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATACCCTTCACTGGGCGTGGCGGGGA 11705 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||| ||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 11706 AACAGGACATTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 11765 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 11766 TAGCATGGAATAATAAAATAGGACGCGCGGTTCTATTTTGTTGGTTTATAGGACCGCCGT 11825 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| | ||||| || |||||||||||||||||||| Sbjct 11826 AATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGG 11885 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || |||||||||||||||||||||||| || |||||||||||||||||||||| || Sbjct 11886 ATCAGTTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGA 11944 Query 305 ACGAAAGTTAGGGG 318 ||||||||| |||| Sbjct 11945 ACGAAAGTTGGGGG 11958 >seq1592 Length=693907 Score = 172 bits (190), Expect = 1e-40 Identities = 139/167 (83%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||| ||||| |||||| | ||| || ||||||||||||||||| ||||||||| Sbjct 472203 CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCA 472144 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| || |||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 472143 TTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAA 472084 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || |||||||||||||||||||||| ||||||||||| |||| Sbjct 472083 GCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 472038 Score = 141 bits (156), Expect = 2e-31 Identities = 131/165 (79%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 || ||||| |||| | | ||||| ||| ||||||||||||||||| | | || | | Sbjct 501313 GTCCTATTGTGTTAGCCTTTAGGATCGCAGTAATGATTAATAGGGACACCCATGGATATT 501254 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||| ||||||||||||||||| ||||| ||| ||| ||||||| Sbjct 501253 CATATTTCATAGTCAGAGACGAAATTCTTGGATTTATGAAAGACGAACAACTACGAAAGC 501194 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||||||||| ||||||||||| |||| Sbjct 501193 ATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 501150 >seq3413 Length=1400 Score = 149 bits (164), Expect = 1e-33 Identities = 151/193 (78%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185 |||||||||||| ||||||||| | ||||||||||||||||| | || | || ||| Sbjct 261 GCATGGAATAATGGAATAGGACCTT-GGTTCTATTTTGTTGGTCTTAAGAATCCAAGGTA 203 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 202 ATGATTAAGAGGGACAGACGGGGGCATTTGTATTGCGGCGCTAGAGGTGAAATTCTTGGA 143 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| |||||| |||||||| || ||||| |||||||||||||||| ||| Sbjct 142 CCGTCGCAAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 84 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 83 CGAAAGTTAGAGG 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915158614656