Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 688 0.0
seq1592 201 5e-49
seq2668 188 3e-45
seq3582 179 2e-42
seq4368 154 6e-35
seq479 136 2e-29
seq962 131 7e-28
>seq2130
Length=13169
Score = 688 bits (762), Expect = 0.0
Identities = 557/664 (84%), Gaps = 14/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 5808 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTGTAC 5867
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5868 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 5927
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 5928 TGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTT 5987
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261
|||||||||| | |||| || ||||| ||| ||||||||||||| | | |
Sbjct 5988 ATGACCAGACTTGGGCTTGGTTGAACATCCGGCGTTCTC-GCCGGTGCACTCTGC--CAG 6044
Query 262 T-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320
| |||||||||||||| | | | | |||||||||| ||||||||||| ||| | |
Sbjct 6045 TCCAGGCCAGCATCAGTTTGTCCCGGGGGATAAAGGCGGTGGGAATGTGGCTCCC--CCG 6102
Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380
|| ||||||||||||| ||| ||||| | | ||||||||| |||||| ||||
Sbjct 6103 GGAGTGTTATAGCCCGCCGTGCAATGC-CCTGGGACGGACTGAGGAACGCGCTTCGGCAC 6161
Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440
|||||||||||||||||| | | || ||||||||| |||||||||||||||||| |
Sbjct 6162 GGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCT 6220
Query 441 TC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
|| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||
Sbjct 6221 TCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGTAGGTGAGA 6280
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 6281 ----GCTTCGGCGCATCACCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 6336
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 6337 TACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAAC 6396
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||||||||||||||| |||| | ||| ||||||||||| ||||| | ||||||||||||
Sbjct 6397 TCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGG 6456
Query 680 GCGA 683
||||
Sbjct 6457 GCGA 6460
>seq1592
Length=693907
Score = 201 bits (222), Expect = 5e-49
Identities = 218/283 (77%), Gaps = 7/283 (2%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| ||||||||||||||||||| |||| ||||||| |||| | |
Sbjct 470031 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 469972
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520
|||| | | ||| || ||| ||| ||| |||| || | | || ||||| |
Sbjct 469971 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 469915
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| |||||| | | || || || |||| ||||| |||| |||||||||||||
Sbjct 469914 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 469855
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||
Sbjct 469854 TGGTGAACTATGCCTGAGTGGGGCAAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 469795
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 469794 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 469752
Score = 156 bits (172), Expect = 2e-35
Identities = 139/174 (80%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || ||||||||||| |||||||||||||||||| | || ||| |||||| | |
Sbjct 470379 GAGGCGCCGTCGACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 470320
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||| ||||||| ||||||| |||| |||||||||
Sbjct 470319 GTCCAAGGCTAAATACAGGCAAGAGACTGATAGCGAACAAGTACCGTGAGGGAAAGATGA 470260
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||| |||||| ||||||||| ||| || | |||||||| || ||| |||||
Sbjct 470259 AAATGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCTGGGAGGAAAGCG 470206
Score = 156 bits (172), Expect = 2e-35
Identities = 207/279 (74%), Gaps = 9/279 (3%)
Strand=Plus/Minus
Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466
||| ||||| ||||| ||||||||||||| |||| ||||||| ||||| | ||||
Sbjct 486521 CCCATCTTGAAACACAGACCAAGGAGTCTGACATGCGTGCGAGTCGATGGGTTCTGAAAC 486462
Query 467 CCGTGC-GCGTAATGAAAGTGAACGG-AGGTGGGAACCCGTGAGGGTGCACCAT-CGACC 523
| | ||| || ||| ||| || ||| || ||| |||| ||| | | | |
Sbjct 486461 CTAGGATGCGCAAGGAAGCTGATGGGCAGGAGG---CCCCCACGGGT-CACACTGCTAGC 486406
Query 524 -GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
|| | |||| | | || || || |||| ||||| || | ||||||| ||||| |
Sbjct 486405 TGACCTTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCAAAAGAGG 486346
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
|||||||||||| || ||| |||||||||||||||||||||||||||||| |||| |
Sbjct 486345 GTGAACTATGCCGGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 486286
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| ||||||||||| ||||| | ||||||||||||||
Sbjct 486285 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGC 486247
Score = 98.7 bits (108), Expect = 4e-18
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
||||| |||||||||||||||||| | || ||| | ||| | ||| | || |||||
Sbjct 486892 AGTCGGGTTGTTTGGGAATGCAGCCCAAATAGGGCGAGAAACTCTTTCCAGGGCCAAATA 486833
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160
| ||||||||||| | ||||||| || ||||||||||||| |||||| |||
Sbjct 486832 CAAGTGAGAGACCGATACCAGACAAGTACCACGAGGGAAAGATGAAAAGGACTTTGAAAA 486773
Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
|||||| ||| || | | ||||| || |||||||
Sbjct 486772 GAGAGTCAAAGAGTGCTTAAAATTACTGGGAGGGAAG 486736
>seq2668
Length=1368154
Score = 188 bits (208), Expect = 3e-45
Identities = 215/283 (76%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||| |||| |||| |||||||||||||| |||| ||||||| |||| | |
Sbjct 692952 CGACCCATCTTTAAACATGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 693011
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520
|||| | | ||| || ||| ||| ||| |||| || | | || ||||| |
Sbjct 693012 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 693068
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| |||||| | | || || || |||| ||||| |||| |||||||||||||
Sbjct 693069 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 693128
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 693129 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 693188
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 693189 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 693231
Score = 161 bits (178), Expect = 4e-37
Identities = 140/174 (80%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || ||||||||||| |||||||||||||||||| | || ||| |||||| | |
Sbjct 692539 GAGGCGCCGTCGACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 692598
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||||||||||| ||||||| | || |||||||||
Sbjct 692599 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 692658
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||| |||||| ||||||||| ||| || | |||||||| | |||||||||
Sbjct 692659 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 692712
>seq3582
Length=1201
Score = 179 bits (198), Expect = 2e-42
Identities = 182/231 (79%), Gaps = 7/231 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 228 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 169
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520
||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| ||
Sbjct 168 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 112
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||||| | |||| | | || || || |||| ||||| | |||| |||||||||||||
Sbjct 111 ACCGACCTTGATCTTCTGTGAAGGGTTCGAGTGGGAGCACACCTGTCGGGACCCGAAAGA 52
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631
||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 51 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGC 1
Score = 154 bits (170), Expect = 6e-35
Identities = 133/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||| | | || || ||
Sbjct 612 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGC 553
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| |||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 552 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 493
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | |||||||| | |||||||||
Sbjct 492 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 448
>seq4368
Length=1120585
Score = 154 bits (170), Expect = 6e-35
Identities = 206/282 (73%), Gaps = 7/282 (2%)
Strand=Plus/Minus
Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466
||| ||||| || ||| |||||||||||| |||| ||||||| | || | ||||
Sbjct 926762 CCCATCTTGAAATACGAACCAAGGAGTCTGACATGCGTGCGAGTCGACGAGTCCTGAAAC 926703
Query 467 CCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525
| | ||| || ||| ||| | || || | | |||| |||| | || |
Sbjct 926702 CTAGGATGCGCAAGGAAGCTGATGAGCGGGAGGCCCTCATGAGCCA-CACCGATGGCCAA 926644
Query 526 TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585
|||||| | | || || || |||| ||||| |||| ||||||||||||||||||
Sbjct 926643 CCCTGATCTTCTTTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTG 926584
Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645
|||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||
Sbjct 926583 AACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTG 926524
Query 646 GCGTGCAAATCGATCGTCAAATTTGG----GTATAGGGGCGA 683
|||||||||| ||||| | |||| ||||||||||||
Sbjct 926523 ACGTGCAAATCATTCGTCTGACTTGGGTACGTATAGGGGCGA 926482
>seq479
Length=22593
Score = 136 bits (150), Expect = 2e-29
Identities = 107/128 (84%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
|| ||| |||| | |||||||||||||||||||| ||| | | | | ||||||||||||
Sbjct 1613 AGTATATATGTTAGTACCCGAAAGATGGTGAACTAAGCCCGGACAAGATGAAGCCAGAGG 1554
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
||||||||||||||| | |||| ||||| |||||||||||||||||| || |||| |
Sbjct 1553 AAACTCTGGTGGAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGATCCGGGTTT 1494
Query 676 AGGGGCGA 683
||||||||
Sbjct 1493 AGGGGCGA 1486
>seq962
Length=23983
Score = 131 bits (144), Expect = 7e-28
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
|||||||| | | | |||||||||||||||| |||||| ||| | |||||||||| |
Sbjct 20142 AGAGCATATACGGTAGTACCCGAAAGATGGTGATCTATGCTTGAGCAAGGTGAAGCCAAA 20083
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||| |||||||||| ||||| ||| || ||||||||||||| |||| | ||| ||
Sbjct 20082 GGAAACTTTGGTGGAGGCCTGCAGCAGTTTTGACGTGCAAATCGATTGTCAGACTTGAGT 20023
Query 674 ATAGGGGCGA 683
|||| |||||
Sbjct 20022 ATAGCGGCGA 20013
Score = 105 bits (116), Expect = 3e-20
Identities = 110/143 (77%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||| || ||||||| || | ||||||| ||| |||| |||||||
Sbjct 20829 GAGTAGGGTTGCTTGAGAGTGCAGCTTGAAGTAGGAGGTATGCATCTCCTAAGGCTAAAT 20770
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| |||||||||||| |||||||| |||| |||||| ||||||| |||||| |
Sbjct 20769 ATCACTGCGAGACCGATAGCAAACAAGTAGCGTGAGCGAAAGTTGAAAAGAACTTTGAAG 20710
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| |||| |||||||
Sbjct 20709 AGAGAGTT-CAAAGAGCGTGAAA 20688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079903003100
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