Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2130 688 0.0 seq1592 201 5e-49 seq2668 188 3e-45 seq3582 179 2e-42 seq4368 154 6e-35 seq479 136 2e-29 seq962 131 7e-28 >seq2130 Length=13169 Score = 688 bits (762), Expect = 0.0 Identities = 557/664 (84%), Gaps = 14/664 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| | Sbjct 5808 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTGTAC 5867 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5868 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 5927 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 5928 TGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTT 5987 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 |||||||||| | |||| || ||||| ||| ||||||||||||| | | | Sbjct 5988 ATGACCAGACTTGGGCTTGGTTGAACATCCGGCGTTCTC-GCCGGTGCACTCTGC--CAG 6044 Query 262 T-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 | |||||||||||||| | | | | |||||||||| ||||||||||| ||| | | Sbjct 6045 TCCAGGCCAGCATCAGTTTGTCCCGGGGGATAAAGGCGGTGGGAATGTGGCTCCC--CCG 6102 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380 || ||||||||||||| ||| ||||| | | ||||||||| |||||| |||| Sbjct 6103 GGAGTGTTATAGCCCGCCGTGCAATGC-CCTGGGACGGACTGAGGAACGCGCTTCGGCAC 6161 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||||||||||||||||| | | || ||||||||| |||||||||||||||||| | Sbjct 6162 GGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCT 6220 Query 441 TC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 || |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| || Sbjct 6221 TCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGTAGGTGAGA 6280 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| || |||||||||||||||| ||||||||||||||||||||||| Sbjct 6281 ----GCTTCGGCGCATCACCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 6336 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 6337 TACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAAC 6396 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||||||||||| |||| | ||| ||||||||||| ||||| | |||||||||||| Sbjct 6397 TCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGG 6456 Query 680 GCGA 683 |||| Sbjct 6457 GCGA 6460 >seq1592 Length=693907 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 470031 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 469972 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 469971 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 469915 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 469914 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 469855 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||| Sbjct 469854 TGGTGAACTATGCCTGAGTGGGGCAAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 469795 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 469794 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 469752 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || ||||||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 470379 GAGGCGCCGTCGACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 470320 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||| ||||||| ||||||| |||| ||||||||| Sbjct 470319 GTCCAAGGCTAAATACAGGCAAGAGACTGATAGCGAACAAGTACCGTGAGGGAAAGATGA 470260 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||| ||||||||| ||| || | |||||||| || ||| ||||| Sbjct 470259 AAATGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCTGGGAGGAAAGCG 470206 Score = 156 bits (172), Expect = 2e-35 Identities = 207/279 (74%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||| ||||| ||||| ||||||||||||| |||| ||||||| ||||| | |||| Sbjct 486521 CCCATCTTGAAACACAGACCAAGGAGTCTGACATGCGTGCGAGTCGATGGGTTCTGAAAC 486462 Query 467 CCGTGC-GCGTAATGAAAGTGAACGG-AGGTGGGAACCCGTGAGGGTGCACCAT-CGACC 523 | | ||| || ||| ||| || ||| || ||| |||| ||| | | | | Sbjct 486461 CTAGGATGCGCAAGGAAGCTGATGGGCAGGAGG---CCCCCACGGGT-CACACTGCTAGC 486406 Query 524 -GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | |||| | | || || || |||| ||||| || | ||||||| ||||| | Sbjct 486405 TGACCTTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCAAAAGAGG 486346 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||| || ||| |||||||||||||||||||||||||||||| |||| | Sbjct 486345 GTGAACTATGCCGGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 486286 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||||||||||| ||||| | |||||||||||||| Sbjct 486285 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGC 486247 Score = 98.7 bits (108), Expect = 4e-18 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||||||||||||||||| | || ||| | ||| | ||| | || ||||| Sbjct 486892 AGTCGGGTTGTTTGGGAATGCAGCCCAAATAGGGCGAGAAACTCTTTCCAGGGCCAAATA 486833 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | ||||||||||| | ||||||| || ||||||||||||| |||||| ||| Sbjct 486832 CAAGTGAGAGACCGATACCAGACAAGTACCACGAGGGAAAGATGAAAAGGACTTTGAAAA 486773 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||| ||| || | | ||||| || ||||||| Sbjct 486772 GAGAGTCAAAGAGTGCTTAAAATTACTGGGAGGGAAG 486736 >seq2668 Length=1368154 Score = 188 bits (208), Expect = 3e-45 Identities = 215/283 (76%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||| |||| |||| |||||||||||||| |||| ||||||| |||| | | Sbjct 692952 CGACCCATCTTTAAACATGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 693011 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 693012 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 693068 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 693069 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 693128 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 693129 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 693188 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 693189 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 693231 Score = 161 bits (178), Expect = 4e-37 Identities = 140/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || ||||||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 692539 GAGGCGCCGTCGACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 692598 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 692599 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 692658 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 692659 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 692712 >seq3582 Length=1201 Score = 179 bits (198), Expect = 2e-42 Identities = 182/231 (79%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 228 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 169 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 168 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 112 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||| | |||| ||||||||||||| Sbjct 111 ACCGACCTTGATCTTCTGTGAAGGGTTCGAGTGGGAGCACACCTGTCGGGACCCGAAAGA 52 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 51 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGC 1 Score = 154 bits (170), Expect = 6e-35 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||| | | || || || Sbjct 612 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGC 553 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 552 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 493 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | |||||||| | ||||||||| Sbjct 492 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 448 >seq4368 Length=1120585 Score = 154 bits (170), Expect = 6e-35 Identities = 206/282 (73%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||| ||||| || ||| |||||||||||| |||| ||||||| | || | |||| Sbjct 926762 CCCATCTTGAAATACGAACCAAGGAGTCTGACATGCGTGCGAGTCGACGAGTCCTGAAAC 926703 Query 467 CCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 | | ||| || ||| ||| | || || | | |||| |||| | || | Sbjct 926702 CTAGGATGCGCAAGGAAGCTGATGAGCGGGAGGCCCTCATGAGCCA-CACCGATGGCCAA 926644 Query 526 TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 |||||| | | || || || |||| ||||| |||| |||||||||||||||||| Sbjct 926643 CCCTGATCTTCTTTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTG 926584 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||||||||||| ||| |||||||||||||||||||||||||||||| |||| | ||| Sbjct 926583 AACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTG 926524 Query 646 GCGTGCAAATCGATCGTCAAATTTGG----GTATAGGGGCGA 683 |||||||||| ||||| | |||| |||||||||||| Sbjct 926523 ACGTGCAAATCATTCGTCTGACTTGGGTACGTATAGGGGCGA 926482 >seq479 Length=22593 Score = 136 bits (150), Expect = 2e-29 Identities = 107/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 || ||| |||| | |||||||||||||||||||| ||| | | | | |||||||||||| Sbjct 1613 AGTATATATGTTAGTACCCGAAAGATGGTGAACTAAGCCCGGACAAGATGAAGCCAGAGG 1554 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| | |||| ||||| |||||||||||||||||| || |||| | Sbjct 1553 AAACTCTGGTGGAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGATCCGGGTTT 1494 Query 676 AGGGGCGA 683 |||||||| Sbjct 1493 AGGGGCGA 1486 >seq962 Length=23983 Score = 131 bits (144), Expect = 7e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| | | | |||||||||||||||| |||||| ||| | |||||||||| | Sbjct 20142 AGAGCATATACGGTAGTACCCGAAAGATGGTGATCTATGCTTGAGCAAGGTGAAGCCAAA 20083 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||| |||||||||| ||||| ||| || ||||||||||||| |||| | ||| || Sbjct 20082 GGAAACTTTGGTGGAGGCCTGCAGCAGTTTTGACGTGCAAATCGATTGTCAGACTTGAGT 20023 Query 674 ATAGGGGCGA 683 |||| ||||| Sbjct 20022 ATAGCGGCGA 20013 Score = 105 bits (116), Expect = 3e-20 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||| || ||||||| || | ||||||| ||| |||| ||||||| Sbjct 20829 GAGTAGGGTTGCTTGAGAGTGCAGCTTGAAGTAGGAGGTATGCATCTCCTAAGGCTAAAT 20770 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || |||||||||||| |||||||| |||| |||||| ||||||| |||||| | Sbjct 20769 ATCACTGCGAGACCGATAGCAAACAAGTAGCGTGAGCGAAAGTTGAAAAGAACTTTGAAG 20710 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| |||| ||||||| Sbjct 20709 AGAGAGTT-CAAAGAGCGTGAAA 20688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079903003100