Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 325 1e-86
seq2102 113 1e-22
seq4420 91.5 4e-16
seq481 82.4 2e-13
seq4138 78.8 2e-12
>seq2770
Length=3071
Score = 325 bits (360), Expect = 1e-86
Identities = 269/328 (82%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69
|||| |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||
Sbjct 1899 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 1840
Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129
||||| ||||||||||||||||| || |||||| | |||| |||| |||||||||
Sbjct 1839 GTTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTCAGGGGTGAAATCC 1780
Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189
| | ||| ||| |||| ||| |||| |||| | | || |||| || ||||| | ||
Sbjct 1779 CAGAGCTCAACTCTGGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGTAGAGGTGAGT 1720
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||||| |||||| ||||||| ||||||||| |||||||||||| ||||||||||
Sbjct 1719 GGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGC 1660
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
|| | |||| | ||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1659 GGCTCACTGGACCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGA 1600
Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||| ||| ||||||||
Sbjct 1599 TACCCTGGTAGTCCATGCCGTAAACGAT 1572
>seq2102
Length=599917
Score = 113 bits (124), Expect = 1e-22
Identities = 88/105 (84%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 360215 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 360156
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107
|||||||| |||||| | |||||||||||||| | ||| ||||
Sbjct 360155 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGGGGTT 360111
>seq4420
Length=188167
Score = 91.5 bits (100), Expect = 4e-16
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 204 AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATA 263
||| ||||||||| | || || | | ||||||||| |||||| ||| | |||||
Sbjct 87382 AGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 87441
Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323
|||||||| || | |||||||| |||||||||| |||||||| || | |||||||
Sbjct 87442 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACTCCAGTAGTCC 87501
Query 324 ACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCT-TG--GTAACGTAGCT 379
|| |||| ||| ||||| ||||| | || | | ||| || ||| |||||
Sbjct 87502 TAGCTGTAAATGATGGATACTAGGTGTTGTGTGACT--CGACCTGTGCAGTACTATAGCT 87559
Query 380 AACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|||||| |||| || ||| |||| |||
Sbjct 87560 AACGCGATAAGTATCCCACCTAGGGAGTAC 87589
>seq481
Length=972423
Score = 82.4 bits (90), Expect = 2e-13
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335
||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 306903 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACG 306849
>seq4138
Length=316689
Score = 78.8 bits (86), Expect = 2e-12
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 285 AGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 293639 AGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 293691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289541684288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |