Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2770 325 1e-86 seq2102 113 1e-22 seq4420 91.5 4e-16 seq481 82.4 2e-13 seq4138 78.8 2e-12 >seq2770 Length=3071 Score = 325 bits (360), Expect = 1e-86 Identities = 269/328 (82%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 1899 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 1840 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||| ||||||||||||||||| || |||||| | |||| |||| ||||||||| Sbjct 1839 GTTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTCAGGGGTGAAATCC 1780 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | | ||| ||| |||| ||| |||| |||| | | || |||| || ||||| | || Sbjct 1779 CAGAGCTCAACTCTGGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGTAGAGGTGAGT 1720 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||| Sbjct 1719 GGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGC 1660 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || | |||| | ||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1659 GGCTCACTGGACCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGA 1600 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||| ||| |||||||| Sbjct 1599 TACCCTGGTAGTCCATGCCGTAAACGAT 1572 >seq2102 Length=599917 Score = 113 bits (124), Expect = 1e-22 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 360215 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 360156 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 |||||||| |||||| | |||||||||||||| | ||| |||| Sbjct 360155 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGGGGTT 360111 >seq4420 Length=188167 Score = 91.5 bits (100), Expect = 4e-16 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 204 AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATA 263 ||| ||||||||| | || || | | ||||||||| |||||| ||| | ||||| Sbjct 87382 AGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 87441 Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 |||||||| || | |||||||| |||||||||| |||||||| || | ||||||| Sbjct 87442 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACTCCAGTAGTCC 87501 Query 324 ACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCT-TG--GTAACGTAGCT 379 || |||| ||| ||||| ||||| | || | | ||| || ||| ||||| Sbjct 87502 TAGCTGTAAATGATGGATACTAGGTGTTGTGTGACT--CGACCTGTGCAGTACTATAGCT 87559 Query 380 AACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||| |||| || ||| |||| ||| Sbjct 87560 AACGCGATAAGTATCCCACCTAGGGAGTAC 87589 >seq481 Length=972423 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| Sbjct 306903 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACG 306849 >seq4138 Length=316689 Score = 78.8 bits (86), Expect = 2e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 285 AGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 293639 AGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 293691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289541684288