Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2035 136 5e-30 seq4190 107 3e-21 seq1114 107 3e-21 seq4216 77.0 5e-12 >seq2035 Length=9416 Score = 136 bits (150), Expect = 5e-30 Identities = 171/236 (72%), Gaps = 19/236 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3978 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 4036 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 4037 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 4083 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 4084 ---TTTGCGAG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 4138 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 || | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 4139 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACTCACCTGTGTCGGTT 4194 >seq4190 Length=2156036 Score = 107 bits (118), Expect = 3e-21 Identities = 132/182 (73%), Gaps = 19/182 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 1174625 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 1174567 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||||| || || |||||||| | Sbjct 1174566 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACCCC--------------- 1174522 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | || | ||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 1174521 -CTTTTGCGAG--GGGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCTGAGTTCCT 1174465 Query 186 TA 187 || Sbjct 1174464 TA 1174463 >seq1114 Length=1590138 Score = 107 bits (118), Expect = 3e-21 Identities = 134/181 (74%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| ||||||||| ||||| ||| ||| | || Sbjct 1023529 CCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1023587 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | || |||| | Sbjct 1023588 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGC--CGCTTTCCTAATCAAAAGA 1023645 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1023646 T--------AGGAG-AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1023696 Query 186 T 186 | Sbjct 1023697 T 1023697 >seq4216 Length=263439 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 158672 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 158614 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 158613 TGTGTTTTTGGTAAACAGTCGC 158592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694369580506