Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 136 5e-30
seq4190 107 3e-21
seq1114 107 3e-21
seq4216 77.0 5e-12
>seq2035
Length=9416
Score = 136 bits (150), Expect = 5e-30
Identities = 171/236 (72%), Gaps = 19/236 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 3978 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 4036
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 4037 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 4083
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| | || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 4084 ---TTTGCGAG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 4138
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
|| | |||| | || | ||| ||||||||||||| ||||||||||||||
Sbjct 4139 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACTCACCTGTGTCGGTT 4194
>seq4190
Length=2156036
Score = 107 bits (118), Expect = 3e-21
Identities = 132/182 (73%), Gaps = 19/182 (10%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 1174625 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 1174567
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||||| || || |||||||| |
Sbjct 1174566 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACCCC--------------- 1174522
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || | || | ||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 1174521 -CTTTTGCGAG--GGGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCTGAGTTCCT 1174465
Query 186 TA 187
||
Sbjct 1174464 TA 1174463
>seq1114
Length=1590138
Score = 107 bits (118), Expect = 3e-21
Identities = 134/181 (74%), Gaps = 12/181 (7%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| ||||||||| ||||| ||| ||| | ||
Sbjct 1023529 CCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1023587
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | || |||| |
Sbjct 1023588 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGC--CGCTTTCCTAATCAAAAGA 1023645
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1023646 T--------AGGAG-AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1023696
Query 186 T 186
|
Sbjct 1023697 T 1023697
>seq4216
Length=263439
Score = 77.0 bits (84), Expect = 5e-12
Identities = 67/82 (82%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 158672 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 158614
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||||||
Sbjct 158613 TGTGTTTTTGGTAAACAGTCGC 158592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694369580506
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |