Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4216 237 4e-60 seq2035 221 3e-55 seq1114 219 1e-54 seq4137 187 6e-45 seq3968 165 2e-38 seq4190 87.8 5e-15 seq4141 87.8 5e-15 seq4032 87.8 5e-15 seq481 78.8 2e-12 >seq4216 Length=263439 Score = 237 bits (262), Expect = 4e-60 Identities = 228/292 (78%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 158862 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 158803 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158802 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 158743 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| |||| ||||||| || ||||| | | || | ||| Sbjct 158742 TAGTTACGGCCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 158683 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 158682 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 158623 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 158622 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 158571 >seq2035 Length=9416 Score = 221 bits (244), Expect = 3e-55 Identities = 259/354 (73%), Gaps = 26/354 (7%) Strand=Plus/Plus Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||| ||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904 Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAA 185 |||| |||||||||||| || |||||||||||| ||| ||||| | | || | | Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTTCGGTCACTGGCTTCCCTGTCATCAGTTCA 3964 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 || | || |||||||||||| |||||||||||| ||| |||| | ||| || Sbjct 3965 CCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGAC 4024 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | | Sbjct 4025 TTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT 4084 Query 306 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365 || ||| ||| | ||||||||||||||||||| || Sbjct 4085 TTGC-----GAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCT 4122 Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 4123 ATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 4176 >seq1114 Length=1590138 Score = 219 bits (242), Expect = 1e-54 Identities = 220/286 (77%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 1023343 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1023402 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1023403 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1023462 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 1023463 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 1023516 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| | |||||| || || | | Sbjct 1023517 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCACT 1023576 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | ||||||| ||||||||||||||||||||||| | |||||||| Sbjct 1023577 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 1023622 >seq4137 Length=326916 Score = 187 bits (206), Expect = 6e-45 Identities = 203/269 (75%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| |||| || || ||||||| ||| ||| ||||||| | | || ||| Sbjct 110099 GCATCTTTACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGTCCAGATTGTT 110158 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 110159 ATGCCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| | ||||||||| || ||||| | | || | ||| Sbjct 110219 TAGTTACGGCCGCCGTTCATCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 110278 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||| ||| |||||||||||| || |||| | ||| || ||| Sbjct 110279 ACTTCCTTTACCTTCCGACACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGACTTT 110338 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTC 277 || ||| |||||||||| ||||||||| Sbjct 110339 GCGGAGACCTGTGTTTTTGGTAAACAGTC 110367 >seq3968 Length=2278032 Score = 165 bits (182), Expect = 2e-38 Identities = 124/146 (85%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| | ||||||| ||| |||||| Sbjct 562348 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAGATCGTT 562289 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 562288 ACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 562229 Query 133 TTGTTACGGCCGCCGTTTACCGGGGC 158 | ||||||||| ||||| | |||||| Sbjct 562228 TAGTTACGGCCACCGTTCAGCGGGGC 562203 >seq4190 Length=2156036 Score = 87.8 bits (96), Expect = 5e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 1174629 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 1174570 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||| ||||||||||| |||||||| || ||||| Sbjct 1174569 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACC 1174524 >seq4141 Length=292187 Score = 87.8 bits (96), Expect = 5e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||| ||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 53735 GCATCTTCGCAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 53794 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 108 ||||| ||||||| ||||||||| |||||||||||| Sbjct 53795 ACGCCTTTCGTGCGGGTCGGAACATACCCGACAAGG 53830 >seq4032 Length=366098 Score = 87.8 bits (96), Expect = 5e-15 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 ||||||||| || || ||||||| || ||| |||||| ||| ||| | || Sbjct 187422 ATCTTCACAAACATGTCTATTTCACCTAGCCTCTCTCCGAGACAATGCCCAGATCATCAC 187481 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct 187482 GCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGA 187531 >seq481 Length=972423 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||| | ||| | |||||||||| || ||||| Sbjct 307857 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 307916 Query 73 ACGCCATTCGTGCAGGTCGGAACTTA 98 || |||||||||||||||| ||||| Sbjct 307917 ACACCATTCGTGCAGGTCGCTACTTA 307942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260742986624