Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq4216 237 4e-60
seq2035 221 3e-55
seq1114 219 1e-54
seq4137 187 6e-45
seq3968 165 2e-38
seq4190 87.8 5e-15
seq4141 87.8 5e-15
seq4032 87.8 5e-15
seq481 78.8 2e-12
>seq4216
Length=263439
Score = 237 bits (262), Expect = 4e-60
Identities = 228/292 (78%), Gaps = 4/292 (1%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 158862 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 158803
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158802 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 158743
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188
| ||||||||||||||| |||| ||||||| || ||||| | | || | |||
Sbjct 158742 TAGTTACGGCCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 158683
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 158682 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 158623
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 158622 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 158571
>seq2035
Length=9416
Score = 221 bits (244), Expect = 3e-55
Identities = 259/354 (73%), Gaps = 26/354 (7%)
Strand=Plus/Plus
Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129
|||| ||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904
Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAA 185
|||| |||||||||||| || |||||||||||| ||| ||||| | | || | |
Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTTCGGTCACTGGCTTCCCTGTCATCAGTTCA 3964
Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245
|| | || |||||||||||| |||||||||||| ||| |||| | ||| ||
Sbjct 3965 CCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGAC 4024
Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305
||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | |
Sbjct 4025 TTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT 4084
Query 306 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365
|| ||| ||| | ||||||||||||||||||| ||
Sbjct 4085 TTGC-----GAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCT 4122
Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||||||| |||||||| ||||| |||| || ||| |||||||||||||
Sbjct 4123 ATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 4176
>seq1114
Length=1590138
Score = 219 bits (242), Expect = 1e-54
Identities = 220/286 (77%), Gaps = 6/286 (2%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 1023343 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1023402
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1023403 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1023462
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||| ||| | ||
Sbjct 1023463 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 1023516
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||||||| |||||||||||| |||| | |||||| || || | |
Sbjct 1023517 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCACT 1023576
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292
| ||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 1023577 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 1023622
>seq4137
Length=326916
Score = 187 bits (206), Expect = 6e-45
Identities = 203/269 (75%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
||||||| |||| || || ||||||| ||| ||| ||||||| | | || |||
Sbjct 110099 GCATCTTTACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGTCCAGATTGTT 110158
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
| ||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 110159 ATGCCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188
| ||||||||||||||| | ||||||||| || ||||| | | || | |||
Sbjct 110219 TAGTTACGGCCGCCGTTCATCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 110278
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||| ||| |||||||||||| || |||| | ||| || |||
Sbjct 110279 ACTTCCTTTACCTTCCGACACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGACTTT 110338
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTC 277
|| ||| |||||||||| |||||||||
Sbjct 110339 GCGGAGACCTGTGTTTTTGGTAAACAGTC 110367
>seq3968
Length=2278032
Score = 165 bits (182), Expect = 2e-38
Identities = 124/146 (85%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| | ||||||| ||| ||||||
Sbjct 562348 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAGATCGTT 562289
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 562288 ACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 562229
Query 133 TTGTTACGGCCGCCGTTTACCGGGGC 158
| ||||||||| ||||| | ||||||
Sbjct 562228 TAGTTACGGCCACCGTTCAGCGGGGC 562203
>seq4190
Length=2156036
Score = 87.8 bits (96), Expect = 5e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254
|| |||||||||||| |||||||||||| ||| |||| | ||| || ||||| |||
Sbjct 1174629 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 1174570
Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|||||||||| ||||||||||| |||||||| || |||||
Sbjct 1174569 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACC 1174524
>seq4141
Length=292187
Score = 87.8 bits (96), Expect = 5e-15
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||| ||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 53735 GCATCTTCGCAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 53794
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 108
||||| ||||||| ||||||||| ||||||||||||
Sbjct 53795 ACGCCTTTCGTGCGGGTCGGAACATACCCGACAAGG 53830
>seq4032
Length=366098
Score = 87.8 bits (96), Expect = 5e-15
Identities = 87/112 (78%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74
||||||||| || || ||||||| || ||| |||||| ||| ||| | ||
Sbjct 187422 ATCTTCACAAACATGTCTATTTCACCTAGCCTCTCTCCGAGACAATGCCCAGATCATCAC 187481
Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||| ||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 187482 GCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGA 187531
>seq481
Length=972423
Score = 78.8 bits (86), Expect = 2e-12
Identities = 69/86 (80%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || ||||||||||| | ||| | |||||||||| || |||||
Sbjct 307857 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 307916
Query 73 ACGCCATTCGTGCAGGTCGGAACTTA 98
|| |||||||||||||||| |||||
Sbjct 307917 ACACCATTCGTGCAGGTCGCTACTTA 307942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260742986624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |