Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4216 282 9e-74 seq2035 279 1e-72 seq4137 269 6e-70 seq1114 268 2e-69 seq3968 183 6e-44 seq4190 178 3e-42 seq4141 107 4e-21 seq1405 98.7 2e-18 seq4032 96.9 7e-18 >seq4216 Length=263439 Score = 282 bits (312), Expect = 9e-74 Identities = 239/292 (82%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 158862 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 158803 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158802 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 158743 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || | ||||| || | ||||| | | || | || Sbjct 158742 TAGTTACGGCCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 158683 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 158682 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 158623 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 || || ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 158622 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 158571 >seq2035 Length=9416 Score = 279 bits (308), Expect = 1e-72 Identities = 243/297 (82%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904 Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGAT-TGCTC---TA 178 ||||||||||||||||| || || ||||||| | ||||| ||||| | | || | Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTT-CGGTCACTGGCTTCCCTGTCATCAGTTC 3963 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||| Sbjct 3964 ACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 4023 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||| || || ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 4024 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT 4083 Query 299 ATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 4084 TTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 4140 >seq4137 Length=326916 Score = 269 bits (298), Expect = 6e-70 Identities = 282/368 (77%), Gaps = 13/368 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | || | ||||||||||| || | ||||||||| ||| || ||| Sbjct 110099 GCATCTTTACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGTCCAGATTGTT 110158 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | |||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 110159 ATGCCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| | ||||||| ||| | ||||| | | || | || Sbjct 110219 TAGTTACGGCCGCCGTTCATCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 110278 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| ||| ||||||||||||||||| |||||| ||||| |||||| Sbjct 110279 ACTTCCTTTACCTTCCGACACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGACTTT 110338 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG 296 || || ||||||||||||||||||||||| | | ||||| || |||| || || Sbjct 110339 GCGGAGACCTGTGTTTTTGGTAAACAGTCACCCGAGCCTAGTCACTGCAACCCCCTTTTG 110398 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | | | ||||||||||||| | |||||| |||| ||||| | |||| ||||| | Sbjct 110399 TGAGGG---GGCACCCCTTCTCTCGAAGTTATGGGGCTATTTTACTAAGTTTCTTAAAGA 110455 Query 357 TAGTTCTC 364 |||| || Sbjct 110456 GAGTTATC 110463 >seq1114 Length=1590138 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 1023343 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1023402 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 1023403 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1023462 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 1023463 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 1023514 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 1023515 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCA 1023574 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 1023575 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1023634 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1023635 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 1023694 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 1023695 CTTCGACATGGTTCTC 1023710 >seq3968 Length=2278032 Score = 183 bits (202), Expect = 6e-44 Identities = 128/146 (88%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | | ||||||||||||| |||||| Sbjct 562348 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAGATCGTT 562289 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 562288 ACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 562229 Query 127 TAGTTACGGCCGCCGTTTACTGGGGC 152 ||||||||||| ||||| | ||||| Sbjct 562228 TAGTTACGGCCACCGTTCAGCGGGGC 562203 >seq4190 Length=2156036 Score = 178 bits (196), Expect = 3e-42 Identities = 141/169 (83%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 1174631 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 1174572 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA- 305 | ||||||||||||||||||||||||||||||||| || ||||| || | | | Sbjct 1174571 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 1174512 Query 306 --GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||||| |||||||||||| ||||||| |||||||||| Sbjct 1174511 GGGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCTGAGTTCCTTA 1174463 >seq4141 Length=292187 Score = 107 bits (118), Expect = 4e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGT 65 ||||||||| | | || | ||||||||||| || | ||||||||||||| ||||| Sbjct 53734 GGCATCTTCGCAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGT 53793 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG 102 |||||||||||||||||||||||| |||||||||||| Sbjct 53794 TACGCCTTTCGTGCGGGTCGGAACATACCCGACAAGG 53830 >seq1405 Length=16443 Score = 98.7 bits (108), Expect = 2e-18 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 29 TTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAA 88 ||||||||| || | | || ||| ||||||||||||||| ||||||||| ||||| || Sbjct 4905 TTCACCGAGCCTCTCTTCGAAACATTGCCCAAATCGTTACACCTTTCGTGTGGGTCAGAT 4846 Query 89 CTTACCCGACAAGGAATTTCGCTA 112 |||||||||||| ||||||||||| Sbjct 4845 CTTACCCGACAAAGAATTTCGCTA 4822 >seq4032 Length=366098 Score = 96.9 bits (106), Expect = 7e-18 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| || | |||||||| || || | |||||| |||||| ||| | || Sbjct 187422 ATCTTCACAAACATGTCTATTTCACCTAGCCTCTCTCCGAGACAATGCCCAGATCATCAC 187481 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||| ||||||||| |||||||||| |||||||||||||| Sbjct 187482 GCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGA 187531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062351958272