Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq4216 282 9e-74
seq2035 279 1e-72
seq4137 269 6e-70
seq1114 268 2e-69
seq3968 183 6e-44
seq4190 178 3e-42
seq4141 107 4e-21
seq1405 98.7 2e-18
seq4032 96.9 7e-18
>seq4216
Length=263439
Score = 282 bits (312), Expect = 9e-74
Identities = 239/292 (82%), Gaps = 4/292 (1%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||||| || | ||||||||||||| ||||||
Sbjct 158862 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 158803
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158802 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 158743
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182
||||||||||||||||| || | ||||| || | ||||| | | || | ||
Sbjct 158742 TAGTTACGGCCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 158683
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||||
Sbjct 158682 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 158623
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294
|| || ||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 158622 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 158571
>seq2035
Length=9416
Score = 279 bits (308), Expect = 1e-72
Identities = 243/297 (82%), Gaps = 9/297 (3%)
Strand=Plus/Plus
Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123
|||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904
Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGAT-TGCTC---TA 178
||||||||||||||||| || || ||||||| | ||||| ||||| | | || |
Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTT-CGGTCACTGGCTTCCCTGTCATCAGTTC 3963
Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238
|| | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||
Sbjct 3964 ACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 4023
Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298
||| || || ||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 4024 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT 4083
Query 299 ATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
| | | ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 4084 TTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 4140
>seq4137
Length=326916
Score = 269 bits (298), Expect = 6e-70
Identities = 282/368 (77%), Gaps = 13/368 (4%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||||| || | || | ||||||||||| || | ||||||||| ||| || |||
Sbjct 110099 GCATCTTTACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGTCCAGATTGTT 110158
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
| |||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 110159 ATGCCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182
||||||||||||||||| | ||||||| ||| | ||||| | | || | ||
Sbjct 110219 TAGTTACGGCCGCCGTTCATCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 110278
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| ||| ||||||||||||||||| |||||| ||||| ||||||
Sbjct 110279 ACTTCCTTTACCTTCCGACACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGACTTT 110338
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG 296
|| || ||||||||||||||||||||||| | | ||||| || |||| || ||
Sbjct 110339 GCGGAGACCTGTGTTTTTGGTAAACAGTCACCCGAGCCTAGTCACTGCAACCCCCTTTTG 110398
Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356
| | | ||||||||||||| | |||||| |||| ||||| | |||| ||||| |
Sbjct 110399 TGAGGG---GGCACCCCTTCTCTCGAAGTTATGGGGCTATTTTACTAAGTTTCTTAAAGA 110455
Query 357 TAGTTCTC 364
|||| ||
Sbjct 110456 GAGTTATC 110463
>seq1114
Length=1590138
Score = 268 bits (296), Expect = 2e-69
Identities = 285/376 (76%), Gaps = 20/376 (5%)
Strand=Plus/Plus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | || | ||||||||||| ||| || ||||||| | |
Sbjct 1023343 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1023402
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1023403 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1023462
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
| |||| |||||| |||||||||||| ||||||| |||| ||| | | ||
Sbjct 1023463 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 1023514
Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238
| || |||| |||||||||||||||||||| ||||| ||||||||||| || | |
Sbjct 1023515 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGAGTCTATACATCGTGTTACCA 1023574
Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298
||||||||| ||||||||||| |||||||||||| ||| | | ||| || | |
Sbjct 1023575 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1023634
Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348
| ||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1023635 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 1023694
Query 349 CTTAACAATAGTTCTC 364
||| || ||||||
Sbjct 1023695 CTTCGACATGGTTCTC 1023710
>seq3968
Length=2278032
Score = 183 bits (202), Expect = 6e-44
Identities = 128/146 (88%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||||| || | | ||||||||||||| ||||||
Sbjct 562348 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAGATCGTT 562289
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 562288 ACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 562229
Query 127 TAGTTACGGCCGCCGTTTACTGGGGC 152
||||||||||| ||||| | |||||
Sbjct 562228 TAGTTACGGCCACCGTTCAGCGGGGC 562203
>seq4190
Length=2156036
Score = 178 bits (196), Expect = 3e-42
Identities = 141/169 (83%), Gaps = 3/169 (2%)
Strand=Plus/Minus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || |
Sbjct 1174631 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 1174572
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA- 305
| ||||||||||||||||||||||||||||||||| || ||||| || | | |
Sbjct 1174571 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 1174512
Query 306 --GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 1174511 GGGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCTGAGTTCCTTA 1174463
>seq4141
Length=292187
Score = 107 bits (118), Expect = 4e-21
Identities = 82/97 (85%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGT 65
||||||||| | | || | ||||||||||| || | ||||||||||||| |||||
Sbjct 53734 GGCATCTTCGCAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGT 53793
Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG 102
|||||||||||||||||||||||| ||||||||||||
Sbjct 53794 TACGCCTTTCGTGCGGGTCGGAACATACCCGACAAGG 53830
>seq1405
Length=16443
Score = 98.7 bits (108), Expect = 2e-18
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 29 TTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAA 88
||||||||| || | | || ||| ||||||||||||||| ||||||||| ||||| ||
Sbjct 4905 TTCACCGAGCCTCTCTTCGAAACATTGCCCAAATCGTTACACCTTTCGTGTGGGTCAGAT 4846
Query 89 CTTACCCGACAAGGAATTTCGCTA 112
|||||||||||| |||||||||||
Sbjct 4845 CTTACCCGACAAAGAATTTCGCTA 4822
>seq4032
Length=366098
Score = 96.9 bits (106), Expect = 7e-18
Identities = 89/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68
|||||||| || | |||||||| || || | |||||| |||||| ||| | ||
Sbjct 187422 ATCTTCACAAACATGTCTATTTCACCTAGCCTCTCTCCGAGACAATGCCCAGATCATCAC 187481
Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||||||||||| ||| ||||||||| |||||||||| ||||||||||||||
Sbjct 187482 GCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGA 187531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062351958272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |