Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2770 432 1e-118 seq1481 192 2e-46 seq3943 170 6e-40 seq447 136 1e-29 seq1314 100 9e-19 seq3 100 9e-19 seq1080 93.3 1e-16 >seq2770 Length=3071 Score = 432 bits (478), Expect = 1e-118 Identities = 400/503 (80%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1504 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 1445 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| |||||||| ||| | Sbjct 1444 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATA---TGAACA--- 1391 Query 121 TAGAGATAGAGGTTTCCCCTTCGGG---GGACAGAGTG----ACAGGTGATGCATGGTTG 173 | | | | | ||| |||| | || || | ||||||| ||||||| || Sbjct 1390 ---ACAAA-ACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 1335 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1334 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCTT 1275 Query 234 TAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGG 293 |||||||||||||| ||||||||||||||| ||||||| |||| || | ||||||||| Sbjct 1274 TAGTTGCCATCATTTAGTTGGGCACTCTAAAGGGACTGCCAGTGATAAGCTGGAGGAAGG 1215 Query 294 TGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 |||||| |||||||| || ||||| |||||| | |||||||||||||||||||||||| Sbjct 1214 TGGGGATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGG 1155 Query 354 ACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 ||| ||||||| | |||||| ||| |||| | |||| |||||||| Sbjct 1154 TGGTGACAGTGGGCAGCAAGCACGCGAGTGTGAGCTAATCTCCAAAAG-CCATCTCAGTT 1096 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 ||||||| | |||||||||||| | |||||| |||||||||||||||||| ||||||| Sbjct 1095 CGGATTGCACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGC 1036 Query 474 ATGCTACGGTGAATACGTTCCCG 496 |||| ||||||||||||||||| Sbjct 1035 ATGCCGCGGTGAATACGTTCCCG 1013 >seq1481 Length=691544 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 287352 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 287411 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 287412 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 287470 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 287471 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 287529 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 287530 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 287586 >seq3943 Length=451420 Score = 170 bits (188), Expect = 6e-40 Identities = 150/186 (81%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 57 GCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACC 116 |||||||||||||||||| |||| |||||||||||||||| |||||||| | || Sbjct 67462 GCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAAT 67403 Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176 ||||| || | ||||| | |||| ||| || | ||||||| ||||||| ||||| Sbjct 67402 CCTCTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCG 67345 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||| ||| || |||||||||||||| |||||||||||||||||| | |||| Sbjct 67344 TCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAG 67285 Query 237 TTGCCA 242 |||||| Sbjct 67284 TTGCCA 67279 >seq447 Length=1725674 Score = 136 bits (150), Expect = 1e-29 Identities = 106/125 (85%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct 780076 CGCAAGAATGAAACTCAAAGGAATTGATGGGG-CCTGCACAAGCGGTGGAGCATGTGGTT 780018 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| |||| |||||||||||||| | |||||||| | ||| ||||| || | Sbjct 780017 TAATTCGATGCAAAGCGAAGAACCTTACTAGGGCTTGACATGCCGTGAATCCTCTTGAAA 779958 Query 127 TAGAG 131 |||| Sbjct 779957 GAGAG 779953 Score = 113 bits (124), Expect = 1e-22 Identities = 101/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| ||||||||||||||||| || ||| || ||||||||| || ||||||| ||| Sbjct 668133 GCAAGAATGAAACTCAAAGGAATTAACAGGG-CCTGCACAAGCG-TGATGCATGTGATTT 668076 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 ||||||| |||| |||||||||||||||| |||||||| | ||| ||||| || | Sbjct 668075 AATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTCTTGAAAG 668016 Query 128 AGAG 131 |||| Sbjct 668015 AGAG 668012 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| || | || ||||||||||||||||| | |||| |||||||||||||||||| | Sbjct 663665 GGGATGAGGCTAAGTCATCATGCCCCTTATGCCTAGGGCGACACACGTGCTACAATGGGC 663724 Query 356 AATACAAAGGG 366 | |||||||| Sbjct 663725 ATGACAAAGGG 663735 >seq1314 Length=697951 Score = 100 bits (110), Expect = 9e-19 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435 ||||||| ||| || ||| ||| || |||||||||||||| || |||||||||| Sbjct 601346 CGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGC 601405 Query 436 CTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCC 494 || ||||||| ||||||||||||||||| | |||| ||| | |||||||| |||||| Sbjct 601406 CTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCC 601465 >seq3 Length=1962159 Score = 100 bits (110), Expect = 9e-19 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 40 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99 ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 826425 CCCACACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCATGG 826484 Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 ||||| || | ||| ||||| || | |||| || Sbjct 826485 CTTGATATGCCATGAATCCTCTTGAAAGAGAGCTT 826519 >seq1080 Length=759652 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||| ||||||||||| | |||||| || ||| ||||||||||| Sbjct 342242 CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATTGCTAGTAATCGCG 342301 Query 467 GATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||| |||||| ||||||||| || |||| |||| Sbjct 342302 GATCGGCATGCCGCGGTGAATATGTACCCGGGCCCT 342337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503931989120