Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 432 1e-118
seq1481 192 2e-46
seq3943 170 6e-40
seq447 136 1e-29
seq1314 100 9e-19
seq3 100 9e-19
seq1080 93.3 1e-16
>seq2770
Length=3071
Score = 432 bits (478), Expect = 1e-118
Identities = 400/503 (80%), Gaps = 18/503 (4%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1504 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 1445
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| |||||||| ||| |
Sbjct 1444 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATA---TGAACA--- 1391
Query 121 TAGAGATAGAGGTTTCCCCTTCGGG---GGACAGAGTG----ACAGGTGATGCATGGTTG 173
| | | | | ||| |||| | || || | ||||||| ||||||| ||
Sbjct 1390 ---ACAAA-ACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 1335
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCT 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1334 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCTT 1275
Query 234 TAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGG 293
|||||||||||||| ||||||||||||||| ||||||| |||| || | |||||||||
Sbjct 1274 TAGTTGCCATCATTTAGTTGGGCACTCTAAAGGGACTGCCAGTGATAAGCTGGAGGAAGG 1215
Query 294 TGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353
|||||| |||||||| || ||||| |||||| | ||||||||||||||||||||||||
Sbjct 1214 TGGGGATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGG 1155
Query 354 ACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413
||| ||||||| | |||||| ||| |||| | |||| ||||||||
Sbjct 1154 TGGTGACAGTGGGCAGCAAGCACGCGAGTGTGAGCTAATCTCCAAAAG-CCATCTCAGTT 1096
Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473
||||||| | |||||||||||| | |||||| |||||||||||||||||| |||||||
Sbjct 1095 CGGATTGCACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGC 1036
Query 474 ATGCTACGGTGAATACGTTCCCG 496
|||| |||||||||||||||||
Sbjct 1035 ATGCCGCGGTGAATACGTTCCCG 1013
>seq1481
Length=691544
Score = 192 bits (212), Expect = 2e-46
Identities = 187/237 (79%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 287352 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 287411
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385
||||| |||||||||||||||||| |||| |||| ||| ||| | | | |||
Sbjct 287412 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 287470
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| ||| || |||| | ||||||||||||||| ||||||||||| | ||||||
Sbjct 287471 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 287529
Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|| ||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 287530 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 287586
>seq3943
Length=451420
Score = 170 bits (188), Expect = 6e-40
Identities = 150/186 (81%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 57 GCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACC 116
|||||||||||||||||| |||| |||||||||||||||| |||||||| | ||
Sbjct 67462 GCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAAT 67403
Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176
||||| || | ||||| | |||| ||| || | ||||||| ||||||| |||||
Sbjct 67402 CCTCTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCG 67345
Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236
|||||||||| ||| || |||||||||||||| |||||||||||||||||| | ||||
Sbjct 67344 TCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAG 67285
Query 237 TTGCCA 242
||||||
Sbjct 67284 TTGCCA 67279
>seq447
Length=1725674
Score = 136 bits (150), Expect = 1e-29
Identities = 106/125 (85%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 780076 CGCAAGAATGAAACTCAAAGGAATTGATGGGG-CCTGCACAAGCGGTGGAGCATGTGGTT 780018
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126
|||||||| |||| |||||||||||||| | |||||||| | ||| ||||| || |
Sbjct 780017 TAATTCGATGCAAAGCGAAGAACCTTACTAGGGCTTGACATGCCGTGAATCCTCTTGAAA 779958
Query 127 TAGAG 131
||||
Sbjct 779957 GAGAG 779953
Score = 113 bits (124), Expect = 1e-22
Identities = 101/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67
||||| ||||||||||||||||| || ||| || ||||||||| || ||||||| |||
Sbjct 668133 GCAAGAATGAAACTCAAAGGAATTAACAGGG-CCTGCACAAGCG-TGATGCATGTGATTT 668076
Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127
||||||| |||| |||||||||||||||| |||||||| | ||| ||||| || |
Sbjct 668075 AATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTCTTGAAAG 668016
Query 128 AGAG 131
||||
Sbjct 668015 AGAG 668012
Score = 75.2 bits (82), Expect = 3e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
|||| || | || ||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct 663665 GGGATGAGGCTAAGTCATCATGCCCCTTATGCCTAGGGCGACACACGTGCTACAATGGGC 663724
Query 356 AATACAAAGGG 366
| ||||||||
Sbjct 663725 ATGACAAAGGG 663735
>seq1314
Length=697951
Score = 100 bits (110), Expect = 9e-19
Identities = 95/120 (79%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435
||||||| ||| || ||| ||| || |||||||||||||| || ||||||||||
Sbjct 601346 CGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGC 601405
Query 436 CTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCC 494
|| ||||||| ||||||||||||||||| | |||| ||| | |||||||| ||||||
Sbjct 601406 CTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCC 601465
>seq3
Length=1962159
Score = 100 bits (110), Expect = 9e-19
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 40 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99
||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 826425 CCCACACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCATGG 826484
Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134
||||| || | ||| ||||| || | |||| ||
Sbjct 826485 CTTGATATGCCATGAATCCTCTTGAAAGAGAGCTT 826519
>seq1080
Length=759652
Score = 93.3 bits (102), Expect = 1e-16
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466
||||||||||||||| ||||||||||| | |||||| || ||| |||||||||||
Sbjct 342242 CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATTGCTAGTAATCGCG 342301
Query 467 GATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||| |||||| ||||||||| || |||| ||||
Sbjct 342302 GATCGGCATGCCGCGGTGAATATGTACCCGGGCCCT 342337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503931989120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |