Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2130 342 8e-92 seq1592 273 3e-71 seq479 179 6e-43 seq2668 123 4e-26 seq962 100 5e-19 seq4144 87.8 3e-15 >seq2130 Length=13169 Score = 342 bits (378), Expect = 8e-92 Identities = 233/258 (90%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12459 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 12400 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| || ||| | |||||||||||||||||||| Sbjct 12399 CCTGTTATTGCCTCAAACTTCCTTCGGCTTGA-GCCGAAAGTCCCTCTAAGAAGCCAGCG 12341 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || || | ||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 12340 CACTGCCGGAG-CAATGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 12282 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12281 AGCAGACAAGTCACCCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 12222 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| ||| |||||| Sbjct 12221 AAGAGCTCTCAGTCTGTC 12204 >seq1592 Length=693907 Score = 273 bits (302), Expect = 3e-71 Identities = 218/260 (84%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | |||||||||| |||||| ||| ||||||||||||||||||||||| Sbjct 500645 TACTCGTTGAATGCATCAGTGTAGCACGCGTGTGGCTCAGAACATCTAAGGGCATCACAG 500704 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 500705 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 500764 Query 121 CACCAACC-AT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || | |||| ||||||| | ||||||||||||||| |||||| Sbjct 500765 TGTGGAGGGATGACTCCGTATAGCTAGGTAGCAGGATGAGGTCTCGTTCGTTAACGGAAT 500824 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500825 TAACCAGACAAATAGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 500884 Query 239 GAAAGAGCTATCAATCTGTC 258 || |||||| ||| |||||| Sbjct 500885 GATAGAGCTCTCAGTCTGTC 500904 Score = 259 bits (286), Expect = 8e-67 Identities = 215/260 (83%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||| |||| |||||||| ||| ||||||||||||||| | | Sbjct 471533 TACTCGTTGAATACATCAGTATAGCACGCGTGCGATCCAAAACATCTAAGGGCATTATAT 471592 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 471593 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 471652 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||| ||| | ||||||||||||||| |||||| Sbjct 471653 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGTAGGCTGAGGTCTCGTTCGTTAACGGAAT 471712 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471713 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 471772 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 471773 GAAAGAGCTCTCAGTCTGTC 471792 >seq479 Length=22593 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 22301 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 22360 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 22361 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 22417 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 22062 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 22118 >seq2668 Length=1368154 Score = 123 bits (136), Expect = 4e-26 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 673247 TCAGTGTAGCACACTTGCGGCCTGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 673188 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC 123 |||||||| | | || | | | ||||||||||||||| || ||| || Sbjct 673187 AAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGACGCTAGCTAC 673140 >seq962 Length=23983 Score = 100 bits (110), Expect = 5e-19 Identities = 84/102 (82%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTA-TCGGAATTAACCAGACAAATCACTCCACCA 201 || |||||||| || |||| ||||||| ||||||| |||| |||||||||| |||| | Sbjct 22204 TAATTAGCAGGCTAGAGTCTTGTTCGTTTGTCGGAATCAACCTGACAAATCACCCCACGA 22263 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||| |||||||||||||||| | || ||||||||||| Sbjct 22264 ACTAATAACGGCCATGCACCACTATTCACTAAATCAAGAAAG 22305 >seq4144 Length=328929 Score = 87.8 bits (96), Expect = 3e-15 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || |||| ||||||||| ||| ||| | ||||||||||||| ||| ||||||| Sbjct 279949 GTCTCATTTGTTAATGGAATTAACTAGATAAACCGCTCCACCAACTAATAACAGCCATGC 280008 Query 219 ACCACCACCCATAGAATC-AAGAAAGAGCT 247 | || | || |||||||| ||||||||||| Sbjct 280009 A-CATCGCCTATAGAATCAAAGAAAGAGCT 280037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796765094682