Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 342 8e-92
seq1592 273 3e-71
seq479 179 6e-43
seq2668 123 4e-26
seq962 100 5e-19
seq4144 87.8 3e-15
>seq2130
Length=13169
Score = 342 bits (378), Expect = 8e-92
Identities = 233/258 (90%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12459 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 12400
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | |||| || ||| | ||||||||||||||||||||
Sbjct 12399 CCTGTTATTGCCTCAAACTTCCTTCGGCTTGA-GCCGAAAGTCCCTCTAAGAAGCCAGCG 12341
Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || || | ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 12340 CACTGCCGGAG-CAATGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 12282
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12281 AGCAGACAAGTCACCCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 12222
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||| ||||||
Sbjct 12221 AAGAGCTCTCAGTCTGTC 12204
>seq1592
Length=693907
Score = 273 bits (302), Expect = 3e-71
Identities = 218/260 (84%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 500645 TACTCGTTGAATGCATCAGTGTAGCACGCGTGTGGCTCAGAACATCTAAGGGCATCACAG 500704
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 500705 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 500764
Query 121 CACCAACC-AT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| || | || | |||| ||||||| | ||||||||||||||| ||||||
Sbjct 500765 TGTGGAGGGATGACTCCGTATAGCTAGGTAGCAGGATGAGGTCTCGTTCGTTAACGGAAT 500824
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500825 TAACCAGACAAATAGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 500884
Query 239 GAAAGAGCTATCAATCTGTC 258
|| |||||| ||| ||||||
Sbjct 500885 GATAGAGCTCTCAGTCTGTC 500904
Score = 259 bits (286), Expect = 8e-67
Identities = 215/260 (83%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | ||||| |||| |||||||| ||| ||||||||||||||| | |
Sbjct 471533 TACTCGTTGAATACATCAGTATAGCACGCGTGCGATCCAAAACATCTAAGGGCATTATAT 471592
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 471593 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 471652
Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || |||| |||| ||| | ||||||||||||||| ||||||
Sbjct 471653 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGTAGGCTGAGGTCTCGTTCGTTAACGGAAT 471712
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471713 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 471772
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||||||
Sbjct 471773 GAAAGAGCTCTCAGTCTGTC 471792
>seq479
Length=22593
Score = 179 bits (198), Expect = 6e-43
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 22301 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 22360
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 22361 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 22417
Score = 89.7 bits (98), Expect = 8e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 22062 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 22118
>seq2668
Length=1368154
Score = 123 bits (136), Expect = 4e-26
Identities = 92/108 (85%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 673247 TCAGTGTAGCACACTTGCGGCCTGGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 673188
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC 123
|||||||| | | || | | | ||||||||||||||| || ||| ||
Sbjct 673187 AAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGACGCTAGCTAC 673140
>seq962
Length=23983
Score = 100 bits (110), Expect = 5e-19
Identities = 84/102 (82%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTA-TCGGAATTAACCAGACAAATCACTCCACCA 201
|| |||||||| || |||| ||||||| ||||||| |||| |||||||||| |||| |
Sbjct 22204 TAATTAGCAGGCTAGAGTCTTGTTCGTTTGTCGGAATCAACCTGACAAATCACCCCACGA 22263
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243
||||| |||||||||||||||| | || |||||||||||
Sbjct 22264 ACTAATAACGGCCATGCACCACTATTCACTAAATCAAGAAAG 22305
>seq4144
Length=328929
Score = 87.8 bits (96), Expect = 3e-15
Identities = 75/90 (83%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || |||| ||||||||| ||| ||| | ||||||||||||| ||| |||||||
Sbjct 279949 GTCTCATTTGTTAATGGAATTAACTAGATAAACCGCTCCACCAACTAATAACAGCCATGC 280008
Query 219 ACCACCACCCATAGAATC-AAGAAAGAGCT 247
| || | || |||||||| |||||||||||
Sbjct 280009 A-CATCGCCTATAGAATCAAAGAAAGAGCT 280037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796765094682
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |