Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 479 5e-133
seq4368 399 4e-109
seq1592 381 1e-103
seq2668 358 1e-96
seq3443 298 9e-79
seq3781 273 4e-71
seq203 73.4 7e-11
>seq2130
Length=13169
Score = 479 bits (530), Expect = 5e-133
Identities = 284/295 (96%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 765 TACTAAGCTGAATTACCATTGCGGCGA-GTTCATCAGTAGGGTAAAACTAACCTGTCTCA 707
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 647
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 587
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 527
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CGTACGTCGAGGGCCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 472
>seq4368
Length=1120585
Score = 399 bits (442), Expect = 4e-109
Identities = 260/283 (92%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
|||||| || | ||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 924387 AATTACTATCGTGGC-ACGGTCATCA-TAGGGTAAAACTAACCTGTCTCACGACGGTCTA 924444
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
|||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 924445 AACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTC 924504
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924505 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 924564
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||
Sbjct 924565 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGA 924624
Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| |||||||||||||||||||| |||||| |||| ||||||
Sbjct 924625 AGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 924667
>seq1592
Length=693907
Score = 381 bits (422), Expect = 1e-103
Identities = 261/293 (89%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | || | |||||| ||||||||||||||||||||||| |
Sbjct 467647 TACTAGGTTGAATTACTATCGTAGC-ATGGTCATTAGTAGGGTAAAACTAACCTGTCTTA 467705
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||| ||||||| |||||||||||||||||| ||||||||| |||||||| ||| ||
Sbjct 467706 CGACGATCTAAACTCAGCTCACGTTCCCTATTGGTGGGTGAATAATCCAACACTTGGTGA 467765
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467766 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 467825
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 467826 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 467885
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||| | ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 467886 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 467938
>seq2668
Length=1368154
Score = 358 bits (396), Expect = 1e-96
Identities = 256/293 (87%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1136549 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1136491
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 1136490 CGACGGTCTAAACCCAACTCACATTCCCTATTAGTGGGTGAACAATCCAACACTTGGGGA 1136431
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136430 ATTTTGCTTCACATTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1136371
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||| |||||||| | |||||||||||| |||||||||||||||| |||||||||| |
Sbjct 1136370 GAACTTTTGGCTGCTAGAAGCCAGTTATCATTGTGGTAACTTTTCTGACACCTCTAGCTT 1136311
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||| | ||| || ||||||||| ||||||||| |||||| |||| |||||
Sbjct 1136310 CAAACTCCGAAGGTCTAAAGGATTGATAGGCCATGCTTTCACGGTTCATATTC 1136258
Score = 215 bits (238), Expect = 9e-54
Identities = 151/171 (88%), Gaps = 1/171 (1%)
Strand=Plus/Minus
Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
|||||| || ||| |||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 635501 AATTACTATCATGGC-ACGGTCATCAGTAGGGTAAAACTAACATGTCTCACAATGGTCTA 635443
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
|||| |||||| |||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 635442 AACCTAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTAAATTCTGCTTC 635383
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635382 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 635332
Score = 154 bits (170), Expect = 3e-35
Identities = 97/105 (92%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 693400 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTC 693341
Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286
||| | ||| || |||||||||||||||||||| |||||| ||||
Sbjct 693340 AAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTT 693296
>seq3443
Length=1307
Score = 298 bits (330), Expect = 9e-79
Identities = 188/203 (93%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 833 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 774
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||| ||||||||| | || ||| ||||||||||||| |||||||||||||||||||
Sbjct 773 AGTGAGTGAACAATTCTACACTTTGCGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 714
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 713 TCGAAGGATCAAAAAGCGGCGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 654
Query 213 GTGGTAACTTTTCTGGCACCTCT 235
||||||||||||||| |||||||
Sbjct 653 GTGGTAACTTTTCTGACACCTCT 631
>seq3781
Length=1081
Score = 273 bits (302), Expect = 4e-71
Identities = 179/196 (91%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 887 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 945
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 946 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1005
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1065
Query 181 GAACGCTTGGCTGCCA 196
||||||||||||||||
Sbjct 1066 GAACGCTTGGCTGCCA 1081
>seq203
Length=971741
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 789674 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 789733
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 789734 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 789790
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 789791 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 789845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854361364032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |