Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2130 479 5e-133 seq4368 399 4e-109 seq1592 381 1e-103 seq2668 358 1e-96 seq3443 298 9e-79 seq3781 273 4e-71 seq203 73.4 7e-11 >seq2130 Length=13169 Score = 479 bits (530), Expect = 5e-133 Identities = 284/295 (96%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 765 TACTAAGCTGAATTACCATTGCGGCGA-GTTCATCAGTAGGGTAAAACTAACCTGTCTCA 707 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 647 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 646 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 587 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 527 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 | | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 526 CGTACGTCGAGGGCCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 472 >seq4368 Length=1120585 Score = 399 bits (442), Expect = 4e-109 Identities = 260/283 (92%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| || | ||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 924387 AATTACTATCGTGGC-ACGGTCATCA-TAGGGTAAAACTAACCTGTCTCACGACGGTCTA 924444 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| Sbjct 924445 AACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTC 924504 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924505 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 924564 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||| Sbjct 924565 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGA 924624 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || |||||||||||||||||||| |||||| |||| |||||| Sbjct 924625 AGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 924667 >seq1592 Length=693907 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || | |||||| ||||||||||||||||||||||| | Sbjct 467647 TACTAGGTTGAATTACTATCGTAGC-ATGGTCATTAGTAGGGTAAAACTAACCTGTCTTA 467705 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||| ||||||| |||||||||||||||||| ||||||||| |||||||| ||| || Sbjct 467706 CGACGATCTAAACTCAGCTCACGTTCCCTATTGGTGGGTGAATAATCCAACACTTGGTGA 467765 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467766 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 467825 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 467826 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 467885 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 467886 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 467938 >seq2668 Length=1368154 Score = 358 bits (396), Expect = 1e-96 Identities = 256/293 (87%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||| Sbjct 1136549 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1136491 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 1136490 CGACGGTCTAAACCCAACTCACATTCCCTATTAGTGGGTGAACAATCCAACACTTGGGGA 1136431 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136430 ATTTTGCTTCACATTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1136371 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||| |||||||| | |||||||||||| |||||||||||||||| |||||||||| | Sbjct 1136370 GAACTTTTGGCTGCTAGAAGCCAGTTATCATTGTGGTAACTTTTCTGACACCTCTAGCTT 1136311 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| || ||||||||| ||||||||| |||||| |||| ||||| Sbjct 1136310 CAAACTCCGAAGGTCTAAAGGATTGATAGGCCATGCTTTCACGGTTCATATTC 1136258 Score = 215 bits (238), Expect = 9e-54 Identities = 151/171 (88%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| || ||| |||||||||||||||||||||||||| ||||||| | |||||| Sbjct 635501 AATTACTATCATGGC-ACGGTCATCAGTAGGGTAAAACTAACATGTCTCACAATGGTCTA 635443 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||| |||||| |||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct 635442 AACCTAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTAAATTCTGCTTC 635383 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635382 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 635332 Score = 154 bits (170), Expect = 3e-35 Identities = 97/105 (92%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 693400 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTC 693341 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286 ||| | ||| || |||||||||||||||||||| |||||| |||| Sbjct 693340 AAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTT 693296 >seq3443 Length=1307 Score = 298 bits (330), Expect = 9e-79 Identities = 188/203 (93%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 833 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 774 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||| ||||||||| | || ||| ||||||||||||| ||||||||||||||||||| Sbjct 773 AGTGAGTGAACAATTCTACACTTTGCGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 714 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 713 TCGAAGGATCAAAAAGCGGCGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 654 Query 213 GTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||||| ||||||| Sbjct 653 GTGGTAACTTTTCTGACACCTCT 631 >seq3781 Length=1081 Score = 273 bits (302), Expect = 4e-71 Identities = 179/196 (91%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 887 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 945 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 946 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1005 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1065 Query 181 GAACGCTTGGCTGCCA 196 |||||||||||||||| Sbjct 1066 GAACGCTTGGCTGCCA 1081 >seq203 Length=971741 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 789674 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 789733 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 789734 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 789790 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 789791 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 789845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854361364032