Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq203 167 5e-39
seq423 138 2e-30
seq1114 107 4e-21
>seq203
Length=971741
Score = 167 bits (184), Expect = 5e-39
Identities = 177/232 (76%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 790055 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 789996
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | | |||||||||||| ||||
Sbjct 789995 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 789939
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| |
Sbjct 789938 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 789879
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 789878 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 789827
>seq423
Length=54918
Score = 138 bits (152), Expect = 2e-30
Identities = 140/181 (77%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||||||| |||||||||||| ||||| | |||| | || ||| ||| |
Sbjct 49583 GCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGG 49639
Query 208 CAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264
| |||||||||||| ||||| | |||||||| | || | | ||| ||||| ||||
Sbjct 49640 TCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACG 49699
Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324
|||||||| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||
Sbjct 49700 AAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAA 49759
Query 325 G 325
|
Sbjct 49760 G 49760
>seq1114
Length=1590138
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 1023174 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 1023115
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| || | ||| | || || | || || | |||
Sbjct 1023114 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 1023060
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 1023059 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 1023000
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 1022999 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 1022949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982355575872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |