Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1114 107 2e-21 seq4216 104 3e-20 seq3968 104 3e-20 seq4137 86.0 7e-15 seq2035 86.0 7e-15 >seq1114 Length=1590138 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 1023318 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 1023377 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 1023378 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1023437 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 1023438 GACAAGGAATTTCGCTACCTTAGGACAGTTA 1023468 >seq4216 Length=263439 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 158891 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 158832 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||| |||||||||||||||| Sbjct 158831 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 158773 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 158772 ACAAGGAATTTCGCTACCTTAGGACCGTTA 158743 >seq3968 Length=2278032 Score = 104 bits (114), Expect = 3e-20 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 45 GGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNN 103 ||| | || |||||||||| || | | ||||||| |||| | | || ||||||| Sbjct 562357 GGGCAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTTCGAGACAGTGC 562299 Query 104 NNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 163 |||||| ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 562298 CCAGATCGTTACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTT 562239 Query 164 AGGACCGTTA 173 |||||||||| Sbjct 562238 AGGACCGTTA 562229 >seq4137 Length=326916 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 110162 CCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218 >seq2035 Length=9416 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 3851 CCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCGTTA 3907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176028878