Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 107 2e-21
seq4216 104 3e-20
seq3968 104 3e-20
seq4137 86.0 7e-15
seq2035 86.0 7e-15
>seq1114
Length=1590138
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 1023318 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 1023377
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 1023378 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1023437
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 1023438 GACAAGGAATTTCGCTACCTTAGGACAGTTA 1023468
>seq4216
Length=263439
Score = 104 bits (114), Expect = 3e-20
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 158891 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 158832
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || |||||| ||||||||||||||||
Sbjct 158831 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 158773
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 158772 ACAAGGAATTTCGCTACCTTAGGACCGTTA 158743
>seq3968
Length=2278032
Score = 104 bits (114), Expect = 3e-20
Identities = 100/130 (77%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 45 GGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNN 103
||| | || |||||||||| || | | ||||||| |||| | | || |||||||
Sbjct 562357 GGGCAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTTCGAGACAGTGC 562299
Query 104 NNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 163
|||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 562298 CCAGATCGTTACACCTTTCGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTT 562239
Query 164 AGGACCGTTA 173
||||||||||
Sbjct 562238 AGGACCGTTA 562229
>seq4137
Length=326916
Score = 86.0 bits (94), Expect = 7e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 110162 CCTTTCGCGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTA 110218
>seq2035
Length=9416
Score = 86.0 bits (94), Expect = 7e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3851 CCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCGTTA 3907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547176028878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |