Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2770 273 5e-71 seq26 125 2e-26 seq4123 82.4 2e-13 seq3978 82.4 2e-13 seq4301 73.4 8e-11 >seq2770 Length=3071 Score = 273 bits (302), Expect = 5e-71 Identities = 263/336 (78%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 1934 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 1991 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1992 ATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 2051 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||||||||||| ||| ||||| || Sbjct 2052 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGGGCCTTTACCCCA 2111 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||| || |||||||| | || | || ||| Sbjct 2112 CCAACTAGCTAATCCAACGCGGGCTCATCCTTTGCCGATA------AA--------TCTT 2157 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||| ||| | || |||||||||| |||||| ||||| || | | || Sbjct 2158 TCCCCCGAAGGGCACATACGGTATTAGCACAAGTTTCCCTGAGTTATTCCGTAGCAAAAG 2217 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||| | || ||||||||||||| ||||||| Sbjct 2218 GTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 2253 >seq26 Length=1059513 Score = 125 bits (138), Expect = 2e-26 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||| |||||| ||| ||||| |||||| | |||||| |||||||||||||| |||||| Sbjct 617396 TCCCACAGGAGTTTGGGCCGTGCCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAG 617337 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||| |||| |||||||||| ||| ||||||||||||||||||| Sbjct 617336 CTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCT 617293 >seq4123 Length=311907 Score = 82.4 bits (90), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||| |||||||| || ||| ||||||||| |||| Sbjct 185874 CACGCGGCATTG-CTCCGTCAGGCTTTCACCCATTGTGGAAAATTTCCCACTGCTACCTC 185932 Query 89 CCGTAGGAGTCT 100 |||||||||||| Sbjct 185933 CCGTAGGAGTCT 185944 >seq3978 Length=409176 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| ||| Sbjct 226633 GCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTTGGAC 226692 Query 144 CAGTT 148 || || Sbjct 226693 CATTT 226697 >seq4301 Length=2066707 Score = 73.4 bits (80), Expect = 8e-11 Identities = 89/121 (74%), Gaps = 13/121 (11%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||||||| ||||||| || |||||| |||||||||| ||| ||||||||| Sbjct 256519 TCAGGCTTTCGTCCATTGTGGAAAATTCCCTACTGCTGCCT-CCGCGGGAGTCTGG--GT 256575 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||| ||| | ||||| ||||| |||||| || |||| |||| ||||| Sbjct 256576 TGTCTTAGT----------CGCATCATACTCTCGGACCAGCTAGTGATCATCGCATTGGT 256625 Query 167 G 167 | Sbjct 256626 G 256626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071951524160