Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 273 5e-71
seq26 125 2e-26
seq4123 82.4 2e-13
seq3978 82.4 2e-13
seq4301 73.4 8e-11
>seq2770
Length=3071
Score = 273 bits (302), Expect = 5e-71
Identities = 263/336 (78%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 1934 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 1991
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1992 ATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 2051
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| || ||||||||||||||||| ||| ||||| ||
Sbjct 2052 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGGGCCTTTACCCCA 2111
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||||| || |||||||| | || | || |||
Sbjct 2112 CCAACTAGCTAATCCAACGCGGGCTCATCCTTTGCCGATA------AA--------TCTT 2157
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|| |||| ||| | || |||||||||| |||||| ||||| || | | ||
Sbjct 2158 TCCCCCGAAGGGCACATACGGTATTAGCACAAGTTTCCCTGAGTTATTCCGTAGCAAAAG 2217
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
| ||||||| | || ||||||||||||| |||||||
Sbjct 2218 GTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 2253
>seq26
Length=1059513
Score = 125 bits (138), Expect = 2e-26
Identities = 90/104 (87%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146
|||| |||||| ||| ||||| |||||| | |||||| |||||||||||||| ||||||
Sbjct 617396 TCCCACAGGAGTTTGGGCCGTGCCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAG 617337
Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190
||| |||| |||||||||| ||| |||||||||||||||||||
Sbjct 617336 CTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCT 617293
>seq4123
Length=311907
Score = 82.4 bits (90), Expect = 2e-13
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||| |||||||| || ||| ||||||||| ||||
Sbjct 185874 CACGCGGCATTG-CTCCGTCAGGCTTTCACCCATTGTGGAAAATTTCCCACTGCTACCTC 185932
Query 89 CCGTAGGAGTCT 100
||||||||||||
Sbjct 185933 CCGTAGGAGTCT 185944
>seq3978
Length=409176
Score = 82.4 bits (90), Expect = 2e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143
||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||
Sbjct 226633 GCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTTGGAC 226692
Query 144 CAGTT 148
|| ||
Sbjct 226693 CATTT 226697
>seq4301
Length=2066707
Score = 73.4 bits (80), Expect = 8e-11
Identities = 89/121 (74%), Gaps = 13/121 (11%)
Strand=Plus/Plus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
||||||||||| ||||||| || |||||| |||||||||| ||| |||||||||
Sbjct 256519 TCAGGCTTTCGTCCATTGTGGAAAATTCCCTACTGCTGCCT-CCGCGGGAGTCTGG--GT 256575
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||| ||| | ||||| ||||| |||||| || |||| |||| |||||
Sbjct 256576 TGTCTTAGT----------CGCATCATACTCTCGGACCAGCTAGTGATCATCGCATTGGT 256625
Query 167 G 167
|
Sbjct 256626 G 256626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071951524160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |