Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq203 228 3e-57 seq1114 138 4e-30 seq447 96.9 1e-17 seq3127 78.8 3e-12 >seq203 Length=971741 Score = 228 bits (252), Expect = 3e-57 Identities = 341/478 (71%), Gaps = 37/478 (8%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 757673 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 757614 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 757613 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 757554 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 757553 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 757494 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | || | | Sbjct 757493 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 757439 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 757438 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC---- 757385 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTG-----TAGGCACATGGTTTCAGGTAC 481 | | ||||| |||| || | ||| | |||| | |||| || | Sbjct 757384 -------AGAGATCACTT-TCCTCCCACTGCTTGGGACCTCAGCAC---GGTTCACGTTC 757336 Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541 ||||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||| Sbjct 757335 TATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCG 757276 Query 542 GTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 757275 GTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 757218 >seq1114 Length=1590138 Score = 138 bits (152), Expect = 4e-30 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 1025013 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 1025072 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 1025073 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 1025132 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 1025133 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 1025192 Query 263 CGCGCTTCAACCTGCCCATGGATAGATC 290 | | ||||||||||| ||||| |||||| Sbjct 1025193 CTCTCTTCAACCTGCTCATGGCTAGATC 1025220 >seq447 Length=1725674 Score = 96.9 bits (106), Expect = 1e-17 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || |||||||||| ||| | |||||| |||||||||||||||||| |||||| | |||| Sbjct 912331 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 912272 Query 538 ATCGGTCACCAAGGAGTA 555 |||||||||| ||||||| Sbjct 912271 ATCGGTCACCCAGGAGTA 912254 Score = 87.8 bits (96), Expect = 7e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || |||||||||| ||| | |||||| |||||||||||||||||| |||||| | |||| Sbjct 702779 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 702720 Query 538 ATCGGTCACCAAGGAGTA 555 || ||||||| | ||||| Sbjct 702719 ATTGGTCACCCACGAGTA 702702 Score = 87.8 bits (96), Expect = 7e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || |||||||||| ||| | |||||| |||||||||||||||||| |||||| | |||| Sbjct 705707 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 705648 Query 538 ATCGGTCACCAAGGAGTA 555 |||| ||||| | ||||| Sbjct 705647 ATCGATCACCCACGAGTA 705630 Score = 80.6 bits (88), Expect = 1e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570 |||||||||||||||||||||| |||||| ||||| |||| || ||||||||| ||| Sbjct 894873 ACCTTTCCCTCACGGTACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGGG 894814 Query 571 TGGTCCC 577 ||||||| Sbjct 894813 TGGTCCC 894807 >seq3127 Length=515356 Score = 78.8 bits (86), Expect = 3e-12 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 ||||||||| | | | | || || |||| ||||||||||| ||||| ||||| || Sbjct 108049 GAGAACCAGTTCGCTCTAGGTCTGGGTGGCATTTCACCCCTAACCACAACTCATCGGCTG 108108 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279 | | |||||| | ||| ||||| | |||| || || | | || |||||| ||| | Sbjct 108109 ATTCTTCAACATCAGTCGGTTCAGACCTCTACTTAGTTTCATCCAAGCTTCATCCTAGTC 108168 Query 280 ATGGATAGATCAC 292 ||||||||||||| Sbjct 108169 ATGGATAGATCAC 108181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817517808128