Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq203 228 3e-57
seq1114 138 4e-30
seq447 96.9 1e-17
seq3127 78.8 3e-12
>seq203
Length=971741
Score = 228 bits (252), Expect = 3e-57
Identities = 341/478 (71%), Gaps = 37/478 (8%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 757673 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 757614
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | ||
Sbjct 757613 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 757554
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| | || |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 757553 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 757494
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367
|| | |||||||| |||||||||||||||||||| | || | |
Sbjct 757493 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 757439
Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426
||||| || ||| | | | |||| |||||||||||||| |||||||| |||
Sbjct 757438 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC---- 757385
Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTG-----TAGGCACATGGTTTCAGGTAC 481
| | ||||| |||| || | ||| | |||| | |||| || |
Sbjct 757384 -------AGAGATCACTT-TCCTCCCACTGCTTGGGACCTCAGCAC---GGTTCACGTTC 757336
Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541
||||||||| ||| | ||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 757335 TATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCG 757276
Query 542 GTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 757275 GTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 757218
>seq1114
Length=1590138
Score = 138 bits (152), Expect = 4e-30
Identities = 157/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143
|| ||||| |||||| |||| ||||||||||||| || | ||| ||||| ||
Sbjct 1025013 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 1025072
Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203
|||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |
Sbjct 1025073 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 1025132
Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262
|||| ||||||||| | ||| | || || ||||||||||||||||| | | |||
Sbjct 1025133 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 1025192
Query 263 CGCGCTTCAACCTGCCCATGGATAGATC 290
| | ||||||||||| ||||| ||||||
Sbjct 1025193 CTCTCTTCAACCTGCTCATGGCTAGATC 1025220
>seq447
Length=1725674
Score = 96.9 bits (106), Expect = 1e-17
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537
|| |||||||||| ||| | |||||| |||||||||||||||||| |||||| | ||||
Sbjct 912331 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 912272
Query 538 ATCGGTCACCAAGGAGTA 555
|||||||||| |||||||
Sbjct 912271 ATCGGTCACCCAGGAGTA 912254
Score = 87.8 bits (96), Expect = 7e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537
|| |||||||||| ||| | |||||| |||||||||||||||||| |||||| | ||||
Sbjct 702779 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 702720
Query 538 ATCGGTCACCAAGGAGTA 555
|| ||||||| | |||||
Sbjct 702719 ATTGGTCACCCACGAGTA 702702
Score = 87.8 bits (96), Expect = 7e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537
|| |||||||||| ||| | |||||| |||||||||||||||||| |||||| | ||||
Sbjct 705707 GTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCT 705648
Query 538 ATCGGTCACCAAGGAGTA 555
|||| ||||| | |||||
Sbjct 705647 ATCGATCACCCACGAGTA 705630
Score = 80.6 bits (88), Expect = 1e-12
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570
|||||||||||||||||||||| |||||| ||||| |||| || ||||||||| |||
Sbjct 894873 ACCTTTCCCTCACGGTACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGGG 894814
Query 571 TGGTCCC 577
|||||||
Sbjct 894813 TGGTCCC 894807
>seq3127
Length=515356
Score = 78.8 bits (86), Expect = 3e-12
Identities = 97/133 (73%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219
||||||||| | | | | || || |||| ||||||||||| ||||| ||||| ||
Sbjct 108049 GAGAACCAGTTCGCTCTAGGTCTGGGTGGCATTTCACCCCTAACCACAACTCATCGGCTG 108108
Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279
| | |||||| | ||| ||||| | |||| || || | | || |||||| ||| |
Sbjct 108109 ATTCTTCAACATCAGTCGGTTCAGACCTCTACTTAGTTTCATCCAAGCTTCATCCTAGTC 108168
Query 280 ATGGATAGATCAC 292
|||||||||||||
Sbjct 108169 ATGGATAGATCAC 108181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817517808128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |