Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq203 188 2e-45
seq447 86.0 2e-14
>seq203
Length=971741
Score = 188 bits (208), Expect = 2e-45
Identities = 306/421 (73%), Gaps = 22/421 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| |
Sbjct 757607 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 757551
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 757550 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 757495
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182
||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| |
Sbjct 757494 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 757437
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
| ||||||| || |||||| | | |||| | ||| ||| |||| |||| | ||
Sbjct 757436 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 757377
Query 243 AAGTGGGCTCCCACTGCTTGTA--CGCAT-ACGGTTTCAGGATCTATTTCACTCCCCTCT 299
| ||||||||||||| | || |||||| || | ||||||||||| ||| ||
Sbjct 757376 CTTTC--CTCCCACTGCTTGGGACCTCAGCACGGTT-CACGTTCTATTTCACTACCCACT 757320
Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359
|||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||
Sbjct 757319 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 757261
Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
||||||||| | | |||||| | ||||| || || | ||||| || | ||||||
Sbjct 757260 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 757201
Query 420 G 420
|
Sbjct 757200 G 757200
>seq447
Length=1725674
Score = 86.0 bits (94), Expect = 2e-14
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341
||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| |||
Sbjct 912329 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 912271
Query 342 TCGGTCAGTCAGTAGTA 358
||||||| ||| ||||
Sbjct 912270 TCGGTCACCCAGGAGTA 912254
Score = 77.0 bits (84), Expect = 8e-12
Identities = 58/67 (87%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341
||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| |||
Sbjct 702777 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 702719
Query 342 TCGGTCA 348
| |||||
Sbjct 702718 TTGGTCA 702712
Score = 77.0 bits (84), Expect = 8e-12
Identities = 58/67 (87%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341
||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| |||
Sbjct 705705 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 705647
Query 342 TCGGTCA 348
||| |||
Sbjct 705646 TCGATCA 705640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241543854848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |