Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq203 188 2e-45 seq447 86.0 2e-14 >seq203 Length=971741 Score = 188 bits (208), Expect = 2e-45 Identities = 306/421 (73%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 757607 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 757551 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 757550 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 757495 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 757494 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 757437 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 757436 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 757377 Query 243 AAGTGGGCTCCCACTGCTTGTA--CGCAT-ACGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| | || |||||| || | ||||||||||| ||| || Sbjct 757376 CTTTC--CTCCCACTGCTTGGGACCTCAGCACGGTT-CACGTTCTATTTCACTACCCACT 757320 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 757319 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 757261 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 757260 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 757201 Query 420 G 420 | Sbjct 757200 G 757200 >seq447 Length=1725674 Score = 86.0 bits (94), Expect = 2e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| ||| Sbjct 912329 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 912271 Query 342 TCGGTCAGTCAGTAGTA 358 ||||||| ||| |||| Sbjct 912270 TCGGTCACCCAGGAGTA 912254 Score = 77.0 bits (84), Expect = 8e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| ||| Sbjct 702777 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 702719 Query 342 TCGGTCA 348 | ||||| Sbjct 702718 TTGGTCA 702712 Score = 77.0 bits (84), Expect = 8e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| ||| Sbjct 705705 TCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTA 705647 Query 342 TCGGTCA 348 ||| ||| Sbjct 705646 TCGATCA 705640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241543854848