Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2770 199 8e-49 seq26 102 2e-19 seq3987 100 6e-19 seq3978 73.4 8e-11 >seq2770 Length=3071 Score = 199 bits (220), Expect = 8e-49 Identities = 160/193 (83%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | ||||||| | || || ||||||||||||||||||||| Sbjct 1966 GGCATGGCTGGATCAGGCTTGCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2025 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 2026 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 2085 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | ||||||||| |||||| |||| || |||| || Sbjct 2086 CGTCGCCTTGGTGGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCCTTTG 2145 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 2146 CCGATAAATCTTT 2158 >seq26 Length=1059513 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112 |||| |||||| ||||||||| |||||||| | |||||| | ||| |||||| | || | Sbjct 617396 TCCCACAGGAGTTTGGGCCGTGCCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAG 617337 Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 |||| |||| ||| |||||| ||||||| ||||||||||| || Sbjct 617336 CTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCT 617293 >seq3987 Length=395390 Score = 100 bits (110), Expect = 6e-19 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| ||| |||| |||| || || ||||||| |||||| | |||| ||||| Sbjct 152978 GCTCCGTCAGGCTTTTGCCCACTGTGAAAAATTCCCCACTACTGCCTTCTGTAGAAGTCT 152919 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||||||||| || ||| || | | || ||||| ||| ||| Sbjct 152918 GGATTGTGTCTCAGTCCCAATGTAGCTTATCATTCTTTTGGCCCAGCTACTGATTGTCTC 152859 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCC 171 ||||| ||| ||||||| || ||| ||||| | | ||||| Sbjct 152858 ATTGGTAATCTAATATCTCATCAGCTAGATAATCAGATGTGAGCC 152814 >seq3978 Length=409176 Score = 73.4 bits (80), Expect = 8e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 50 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 ||||||| ||||||||||||||||||||||||| || |||||| | ||| ||||| Sbjct 226633 GCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCT 226687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998354852352