Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2130 140 4e-31 >seq2130 Length=13169 Score = 140 bits (154), Expect = 4e-31 Identities = 149/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| Sbjct 11816 CTATAAACCAACAAAATAGAACCGCGCGTCCTATTTTATTATTCCATGCTAATGTATTCG 11757 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| ||||| |||||| |||| | || Sbjct 11756 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAATGTCCTGTTTCCCCGCCA 11697 Query 126 C-ACCAATGAAGGCATACGGGCT--CACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 | ||| |||||| || ||| | ||| || | ||| | || |||| | ||| Sbjct 11696 CGCCCAGTGAAGG-GTATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGC 11638 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 11637 GGTGAGGCGGACC 11625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595173926148