Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 251 1e-64
seq2102 109 9e-22
>seq2770
Length=3071
Score = 251 bits (278), Expect = 1e-64
Identities = 225/282 (80%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||||||||||||| | |||||| | |||||||||||||||||||
Sbjct 1617 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGTCCAGTGAGCCGCCTTCGCCACTGGTGT 1676
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
||||||| ||||||||| |||||||| |||||| ||||||||| | ||||| | ||
Sbjct 1677 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTACCATAC 1736
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|||||| |||| ||||| |||| | ||||||| | | |||||| ||||||
Sbjct 1737 TCAAGACTTCCAGTATCAAAGGCAGTTCCAGAGTTGAGCTCTGGGATTTCACCCCTGACT 1796
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| |||||||| || |||||| |||| |||||||| | |||||| ||| ||| ||
Sbjct 1797 TAAAAGTCCGCCTACGTGCGCTTTACGCCCAGTAAATCCGAACAACGCTAGCCCCCTTCG 1856
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
|||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1857 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 1898
>seq2102
Length=599917
Score = 109 bits (120), Expect = 9e-22
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || |||||
Sbjct 360113 CCCCCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACC 360172
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 360173 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 360215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828763692862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |