Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq203 246 5e-63
seq1114 196 8e-48
seq3544 165 1e-38
seq3960 102 1e-19
seq2035 96.9 5e-18
seq4457 95.1 2e-17
seq892 95.1 2e-17
seq3924 84.2 3e-14
seq1584 77.0 5e-12
>seq203
Length=971741
Score = 246 bits (272), Expect = 5e-63
Identities = 219/273 (80%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| |||| |
Sbjct 789504 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAACG 789563
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 789564 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 789623
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 789624 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 789683
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || | ||||||||||||||||||||||||||| |||
Sbjct 789684 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 789743
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| |||| ||||| | || ||||||||||||
Sbjct 789744 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 789776
>seq1114
Length=1590138
Score = 196 bits (216), Expect = 8e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 1022648 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 1022707
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 1022708 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 1022767
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 1022768 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 1022827
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| |||| || |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 1022828 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 1022887
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 1022888 AGTCGACATCG 1022898
>seq3544
Length=495559
Score = 165 bits (182), Expect = 1e-38
Identities = 189/253 (75%), Gaps = 1/253 (0%)
Strand=Plus/Minus
Query 24 GCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAAC 82
|| |||||| |||||| || |||| | | |||||| | | | | |||| | ||
Sbjct 175213 GCTTTCAGCAGTTATCCTCTCTGCACTTGGATACCCAGCATTTACCGTAGGCATGATGAC 175154
Query 83 TGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT 142
|||| |||||||||| ||||| || |||||||||||||||| ||| || |||||||||
Sbjct 175153 TGGTACACCAGAGGTGTGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATG 175094
Query 143 TTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGC 202
|| |||| ||| | |||| ||||| | ||| ||| |||||||||||| | |||| |
Sbjct 175093 CTCTAACGCTCACACCCGATATGGACCAATCTGCCTCACGACGTTCTGAATCTAGCTTAC 175034
Query 203 GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262
|| || | |||||||| ||||| ||||||||||| ||| || |||| | ||| | |
Sbjct 175033 GTACCGCATTAATGGGTGAACAATCCAACCCTTGGAACCACCTACAGCTCTAGGTGGCAA 174974
Query 263 CGAGCCGACATCG 275
||||| ||||||
Sbjct 174973 AGAGCCAACATCG 174961
>seq3960
Length=419152
Score = 102 bits (112), Expect = 1e-19
Identities = 111/146 (76%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188
|||||||||||| || ||| |||| |||| | ||||| |||||||| ||||||||
Sbjct 342432 AGCTCCTCTCAATACTCTAACGTCCACACCGGACATGGACCAGACTGTCTCACGACGTTC 342491
Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248
|||||| ||||| || || |||||||||||||| ||||||| ||| ||| || |
Sbjct 342492 TGAACCGAGCTCATGTACCGTATTAATGGGCGAACAATCCAACCC-TGGAACCACCTATA 342550
Query 249 GCCCCAGGATGAGACGAGCCGACATC 274
| ||| | | || |||||||||||
Sbjct 342551 GATCCATGTGGCGAAGAGCCGACATC 342576
>seq2035
Length=9416
Score = 96.9 bits (106), Expect = 5e-18
Identities = 97/125 (78%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
|||| |||| ||||| |||||| || |||| ||| | |||| | || | ||||
Sbjct 3527 CTTATATGCTTTCAGTAGTTATCCTCTCTGTACTTGGCTACTCAGCGTTTGTCGTAGGCA 3468
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||||||| |||||||||| |||| ||||||||||||||||||| ||| || ||||
Sbjct 3467 CGACAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCT 3408
Query 136 CTCAA 140
|||||
Sbjct 3407 CTCAA 3403
>seq4457
Length=1040312
Score = 95.1 bits (104), Expect = 2e-17
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243
|||||| |||||| ||| ||| || |||| || |||||||| || ||||||||||||||
Sbjct 589612 CGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTT 589553
Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACAT 273
||||| |||||| ||| || ||| ||||||
Sbjct 589552 CTTCAACCCCAGTATGTGATGAGTCGACAT 589523
>seq892
Length=821409
Score = 95.1 bits (104), Expect = 2e-17
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147
|||||||||| |||| | | |||||||| ||||| || | ||||||||| ||
Sbjct 41732 CACCAGAGGTGCGTCCTTGTCAGTCCTCTCCTACTAGAGAAATGTCCTCTCAATGCTCTA 41673
Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199
||| |||| |||||| |||||||| |||||| |||||||||||||||| ||
Sbjct 41672 ACGTCCACAGCGGATATGGACCGAATTGTCTCACGACGTTCTGAACCCATCT 41621
>seq3924
Length=1297579
Score = 84.2 bits (92), Expect = 3e-14
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 151 CCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCT 210
||||| |||||| ||||||||||||||| |||| ||||||||||||||| ||| || |
Sbjct 701165 CCCACACCGGATATGGACCGAACTGTCTCACGACATTCTGAACCCAGCTCACGTACCGCA 701224
Query 211 TTAATGGGCGAACAGC 226
|||||||| || |||
Sbjct 701225 TTAATGGGATAAAAGC 701240
>seq1584
Length=14052
Score = 77.0 bits (84), Expect = 5e-12
Identities = 101/139 (73%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63
|| |||||| |||| | || ||||| |||||| || | |||| ||| ||||||
Sbjct 3144 GGTGGGCTTACTACTTATACGCTTTCAGTAGTTATCCTCTCTATACTTGGCTACCCAGCG 3203
Query 64 ATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||| | || |||| || ||||||| |||| ||| ||||||||||| ||
Sbjct 3204 TTTATCGTAGGCACGATAATTGGTACATCAGAGGTGCGTCCTTCCTGGTCCTCTCGTGCT 3263
Query 123 AAGGACAGCTCCTCTCAAA 141
| ||| || ||||||||||
Sbjct 3264 AGGGAAAGGTCCTCTCAAA 3282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780765795592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |