Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq203 246 5e-63 seq1114 196 8e-48 seq3544 165 1e-38 seq3960 102 1e-19 seq2035 96.9 5e-18 seq4457 95.1 2e-17 seq892 95.1 2e-17 seq3924 84.2 3e-14 seq1584 77.0 5e-12 >seq203 Length=971741 Score = 246 bits (272), Expect = 5e-63 Identities = 219/273 (80%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||| | Sbjct 789504 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAACG 789563 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 789564 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 789623 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 789624 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 789683 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 789684 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 789743 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 789744 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 789776 >seq1114 Length=1590138 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 1022648 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 1022707 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 1022708 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 1022767 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 1022768 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 1022827 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 1022828 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 1022887 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 1022888 AGTCGACATCG 1022898 >seq3544 Length=495559 Score = 165 bits (182), Expect = 1e-38 Identities = 189/253 (75%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 24 GCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAAC 82 || |||||| |||||| || |||| | | |||||| | | | | |||| | || Sbjct 175213 GCTTTCAGCAGTTATCCTCTCTGCACTTGGATACCCAGCATTTACCGTAGGCATGATGAC 175154 Query 83 TGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT 142 |||| |||||||||| ||||| || |||||||||||||||| ||| || ||||||||| Sbjct 175153 TGGTACACCAGAGGTGTGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATG 175094 Query 143 TTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGC 202 || |||| ||| | |||| ||||| | ||| ||| |||||||||||| | |||| | Sbjct 175093 CTCTAACGCTCACACCCGATATGGACCAATCTGCCTCACGACGTTCTGAATCTAGCTTAC 175034 Query 203 GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262 || || | |||||||| ||||| ||||||||||| ||| || |||| | ||| | | Sbjct 175033 GTACCGCATTAATGGGTGAACAATCCAACCCTTGGAACCACCTACAGCTCTAGGTGGCAA 174974 Query 263 CGAGCCGACATCG 275 ||||| |||||| Sbjct 174973 AGAGCCAACATCG 174961 >seq3960 Length=419152 Score = 102 bits (112), Expect = 1e-19 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 |||||||||||| || ||| |||| |||| | ||||| |||||||| |||||||| Sbjct 342432 AGCTCCTCTCAATACTCTAACGTCCACACCGGACATGGACCAGACTGTCTCACGACGTTC 342491 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 |||||| ||||| || || |||||||||||||| ||||||| ||| ||| || | Sbjct 342492 TGAACCGAGCTCATGTACCGTATTAATGGGCGAACAATCCAACCC-TGGAACCACCTATA 342550 Query 249 GCCCCAGGATGAGACGAGCCGACATC 274 | ||| | | || ||||||||||| Sbjct 342551 GATCCATGTGGCGAAGAGCCGACATC 342576 >seq2035 Length=9416 Score = 96.9 bits (106), Expect = 5e-18 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 |||| |||| ||||| |||||| || |||| ||| | |||| | || | |||| Sbjct 3527 CTTATATGCTTTCAGTAGTTATCCTCTCTGTACTTGGCTACTCAGCGTTTGTCGTAGGCA 3468 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||||||| |||||||||| |||| ||||||||||||||||||| ||| || |||| Sbjct 3467 CGACAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCT 3408 Query 136 CTCAA 140 ||||| Sbjct 3407 CTCAA 3403 >seq4457 Length=1040312 Score = 95.1 bits (104), Expect = 2e-17 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 |||||| |||||| ||| ||| || |||| || |||||||| || |||||||||||||| Sbjct 589612 CGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTT 589553 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACAT 273 ||||| |||||| ||| || ||| |||||| Sbjct 589552 CTTCAACCCCAGTATGTGATGAGTCGACAT 589523 >seq892 Length=821409 Score = 95.1 bits (104), Expect = 2e-17 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| |||| | | |||||||| ||||| || | ||||||||| || Sbjct 41732 CACCAGAGGTGCGTCCTTGTCAGTCCTCTCCTACTAGAGAAATGTCCTCTCAATGCTCTA 41673 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 ||| |||| |||||| |||||||| |||||| |||||||||||||||| || Sbjct 41672 ACGTCCACAGCGGATATGGACCGAATTGTCTCACGACGTTCTGAACCCATCT 41621 >seq3924 Length=1297579 Score = 84.2 bits (92), Expect = 3e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 151 CCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCT 210 ||||| |||||| ||||||||||||||| |||| ||||||||||||||| ||| || | Sbjct 701165 CCCACACCGGATATGGACCGAACTGTCTCACGACATTCTGAACCCAGCTCACGTACCGCA 701224 Query 211 TTAATGGGCGAACAGC 226 |||||||| || ||| Sbjct 701225 TTAATGGGATAAAAGC 701240 >seq1584 Length=14052 Score = 77.0 bits (84), Expect = 5e-12 Identities = 101/139 (73%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| | || ||||| |||||| || | |||| ||| |||||| Sbjct 3144 GGTGGGCTTACTACTTATACGCTTTCAGTAGTTATCCTCTCTATACTTGGCTACCCAGCG 3203 Query 64 ATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||| | || |||| || ||||||| |||| ||| ||||||||||| || Sbjct 3204 TTTATCGTAGGCACGATAATTGGTACATCAGAGGTGCGTCCTTCCTGGTCCTCTCGTGCT 3263 Query 123 AAGGACAGCTCCTCTCAAA 141 | ||| || |||||||||| Sbjct 3264 AGGGAAAGGTCCTCTCAAA 3282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780765795592