Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2770 280 4e-73 seq4123 96.9 8e-18 seq3978 80.6 7e-13 seq4301 77.0 8e-12 >seq2770 Length=3071 Score = 280 bits (310), Expect = 4e-73 Identities = 187/208 (90%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 1934 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 1993 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || | || |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1994 TGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 2053 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||| || Sbjct 2054 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGGGCCTTTACCCCACC 2113 Query 184 AACTAGCTAATCCCATCTGGGTTCATCC 211 ||||||||||||| | ||| |||||| Sbjct 2114 AACTAGCTAATCCAACGCGGGCTCATCC 2141 >seq4123 Length=311907 Score = 96.9 bits (106), Expect = 8e-18 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||| | | |||||||||| ||| | |||||||| | ||||||||| || Sbjct 185854 ACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCACCCATTGTGGAA 185913 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 ||| ||||||||| |||||||||||||||| Sbjct 185914 AATTTCCCACTGCTACCTCCCGTAGGAGTCT 185944 >seq3978 Length=409176 Score = 80.6 bits (88), Expect = 7e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 85 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAC 144 ||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| ||| Sbjct 226633 GCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTTGGAC 226692 Query 145 CA 146 || Sbjct 226693 CA 226694 >seq4301 Length=2066707 Score = 77.0 bits (84), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 13/121 (11%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| || |||||||| || |||||| |||||||||| ||| ||||||||| Sbjct 256519 TCAGGCTTTCGTCCATTGTGGAAAATTCCCTACTGCTGCCT-CCGCGGGAGTCTGG--GT 256575 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| ||| || |||| ||||| |||||||||| |||| |||| | ||| Sbjct 256576 TGTCTTAGTCGCA----------TCATACTCTCGGACCAGCTAGTGATCATCGCATTGGT 256625 Query 168 G 168 | Sbjct 256626 G 256626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222344723072