Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 280 4e-73
seq4123 96.9 8e-18
seq3978 80.6 7e-13
seq4301 77.0 8e-12
>seq2770
Length=3071
Score = 280 bits (310), Expect = 4e-73
Identities = 187/208 (90%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 1934 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 1993
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1994 TGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 2053
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||| ||
Sbjct 2054 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTGGGCCTTTACCCCACC 2113
Query 184 AACTAGCTAATCCCATCTGGGTTCATCC 211
||||||||||||| | ||| ||||||
Sbjct 2114 AACTAGCTAATCCAACGCGGGCTCATCC 2141
>seq4123
Length=311907
Score = 96.9 bits (106), Expect = 8e-18
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||| | | |||||||||| ||| | |||||||| | ||||||||| ||
Sbjct 185854 ACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCACCCATTGTGGAA 185913
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
||| ||||||||| ||||||||||||||||
Sbjct 185914 AATTTCCCACTGCTACCTCCCGTAGGAGTCT 185944
>seq3978
Length=409176
Score = 80.6 bits (88), Expect = 7e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 85 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAC 144
||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| |||
Sbjct 226633 GCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTTGGAC 226692
Query 145 CA 146
||
Sbjct 226693 CA 226694
>seq4301
Length=2066707
Score = 77.0 bits (84), Expect = 8e-12
Identities = 90/121 (74%), Gaps = 13/121 (11%)
Strand=Plus/Plus
Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107
|||||||| || |||||||| || |||||| |||||||||| ||| |||||||||
Sbjct 256519 TCAGGCTTTCGTCCATTGTGGAAAATTCCCTACTGCTGCCT-CCGCGGGAGTCTGG--GT 256575
Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167
||||| ||| || |||| ||||| |||||||||| |||| |||| | |||
Sbjct 256576 TGTCTTAGTCGCA----------TCATACTCTCGGACCAGCTAGTGATCATCGCATTGGT 256625
Query 168 G 168
|
Sbjct 256626 G 256626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222344723072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |