Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 370 3e-100
seq3987 132 1e-28
seq26 111 5e-22
seq4123 100 9e-19
seq2102 98.7 3e-18
seq359 98.7 3e-18
>seq2770
Length=3071
Score = 370 bits (410), Expect = 3e-100
Identities = 297/357 (83%), Gaps = 1/357 (0%)
Strand=Plus/Minus
Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203
||| | ||||| ||||||| ||||||||||||||| ||||| ||| |||||||||
Sbjct 2148 CGGCAAAGGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCG 2089
Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263
|||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| |
Sbjct 2088 ACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGA 2029
Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323
||||||||||||||||||||||||||| || | |||||||| ||||||||| |||| |
Sbjct 2028 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGCAAGCCTGATCCAGCCAT 1969
Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGAC 383
|||||||||| |||||||||| | |||| |||||||||| || | ||||||||||||
Sbjct 1968 GCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATGAC 1909
Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443
|||| | || |||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1908 GGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGG 1849
Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||||||||| | |||| ||||| |||||||||| | |||||| || | |||||||
Sbjct 1848 GCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTC 1793
>seq3987
Length=395390
Score = 132 bits (146), Expect = 1e-28
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
|||| || | | | |||||||| |||| || | || || | ||||||| | ||| |||
Sbjct 152808 AGGAGAGGCTCACATCTGATTATCTAGCTGATGAGATATTAGATTACCAATGAGACAATC 152867
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
|||||| | | | || |||| || ||||||| |||||||||| |||| ||| |||
Sbjct 152868 AGTAGCTGGGCCAAAAGAATGATAAGCTACATTGGGACTGAGACACAATCCAGACTTCTA 152927
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
| | |||||| |||||||||| || |||| ||||||||||||||| | ||||| || ||
Sbjct 152928 CAGAAGGCAGTAGTGGGGAATTTTTCACAGTGGGCAAAAGCCTGACGGAGCAATGCTACG 152987
Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377
|| | ||||| | |||| | | || ||| | |||| ||| ||
Sbjct 152988 TGGAGGTGGAAGGTCCACGGGACATCAACTTCTTTTCTCAGAGAATAT 153035
>seq26
Length=1059513
Score = 111 bits (122), Expect = 5e-22
Identities = 87/104 (84%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171 AGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTG 230
||||||||||| |||||| |||||||||||||| |||||||||| | | |||||| ||
Sbjct 617293 AGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATG 617352
Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274
||| |||||| | | |||||| ||||| |||||||||| ||||
Sbjct 617353 ATCAGCCACACTAGGACTGAGGCACGGCCCAAACTCCTGTGGGA 617396
>seq4123
Length=311907
Score = 100 bits (110), Expect = 9e-19
Identities = 103/134 (77%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
|||||||||||||| ||||||||| ||| || ||||||||| ||||||||| | |||||
Sbjct 185942 ACTCCTACGGGAGGTAGCAGTGGGAAATTTTCCACAATGGGTGAAAGCCTGACGGAGCAA 185883
Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA--AGATAAT 380
|||||||| | ||||||| |||||| | || ||| | ||| || | | |||
Sbjct 185882 TGCCGCGTGGAGGTGGAAGGCCCACGGGTCATCAACTTCTTTTCTCGGAGAATAAACAAT 185823
Query 381 GACGGTACTTGAGG 394
||||||| |||||
Sbjct 185822 GACGGTATCTGAGG 185809
>seq2102
Length=599917
Score = 98.7 bits (108), Expect = 3e-18
Identities = 88/109 (81%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443
|||| |||||| |||| ||||||||| ||||||||||||||||||| || |||
Sbjct 360217 GGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGAT 360158
Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|| ||||||||||||||| | | |||||||||| || ||||| |||||
Sbjct 360157 GCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGGGGTTT 360110
>seq359
Length=971778
Score = 98.7 bits (108), Expect = 3e-18
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348
|| || | ||||||| ||||||||| | ||||| |||||||| | ||||||| ||
Sbjct 443317 ATTTTCCGCAATGGGTGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACG 443376
Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGAAGCCCCGG 406
|||||| || ||| | ||| ||||| | ||||||||| |||||| |||| |||
Sbjct 443377 GGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGG 443436
Query 407 CTAACTACGTGCCAGCAGCCGCG 429
|||||| ||||||||||||||
Sbjct 443437 CTAACTCTATGCCAGCAGCCGCG 443459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497532278528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |