Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2770 370 3e-100 seq3987 132 1e-28 seq26 111 5e-22 seq4123 100 9e-19 seq2102 98.7 3e-18 seq359 98.7 3e-18 >seq2770 Length=3071 Score = 370 bits (410), Expect = 3e-100 Identities = 297/357 (83%), Gaps = 1/357 (0%) Strand=Plus/Minus Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 ||| | ||||| ||||||| ||||||||||||||| ||||| ||| ||||||||| Sbjct 2148 CGGCAAAGGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCG 2089 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 |||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| | Sbjct 2088 ACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGA 2029 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||| || | |||||||| ||||||||| |||| | Sbjct 2028 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGCAAGCCTGATCCAGCCAT 1969 Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGAC 383 |||||||||| |||||||||| | |||| |||||||||| || | |||||||||||| Sbjct 1968 GCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATGAC 1909 Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 |||| | || |||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1908 GGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGG 1849 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||| | |||| ||||| |||||||||| | |||||| || | ||||||| Sbjct 1848 GCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTC 1793 >seq3987 Length=395390 Score = 132 bits (146), Expect = 1e-28 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| || | | | |||||||| |||| || | || || | ||||||| | ||| ||| Sbjct 152808 AGGAGAGGCTCACATCTGATTATCTAGCTGATGAGATATTAGATTACCAATGAGACAATC 152867 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||||| | | | || |||| || ||||||| |||||||||| |||| ||| ||| Sbjct 152868 AGTAGCTGGGCCAAAAGAATGATAAGCTACATTGGGACTGAGACACAATCCAGACTTCTA 152927 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 | | |||||| |||||||||| || |||| ||||||||||||||| | ||||| || || Sbjct 152928 CAGAAGGCAGTAGTGGGGAATTTTTCACAGTGGGCAAAAGCCTGACGGAGCAATGCTACG 152987 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 || | ||||| | |||| | | || ||| | |||| ||| || Sbjct 152988 TGGAGGTGGAAGGTCCACGGGACATCAACTTCTTTTCTCAGAGAATAT 153035 >seq26 Length=1059513 Score = 111 bits (122), Expect = 5e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171 AGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTG 230 ||||||||||| |||||| |||||||||||||| |||||||||| | | |||||| || Sbjct 617293 AGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATG 617352 Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 ||| |||||| | | |||||| ||||| |||||||||| |||| Sbjct 617353 ATCAGCCACACTAGGACTGAGGCACGGCCCAAACTCCTGTGGGA 617396 >seq4123 Length=311907 Score = 100 bits (110), Expect = 9e-19 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||| ||||||||| ||| || ||||||||| ||||||||| | ||||| Sbjct 185942 ACTCCTACGGGAGGTAGCAGTGGGAAATTTTCCACAATGGGTGAAAGCCTGACGGAGCAA 185883 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA--AGATAAT 380 |||||||| | ||||||| |||||| | || ||| | ||| || | | ||| Sbjct 185882 TGCCGCGTGGAGGTGGAAGGCCCACGGGTCATCAACTTCTTTTCTCGGAGAATAAACAAT 185823 Query 381 GACGGTACTTGAGG 394 ||||||| ||||| Sbjct 185822 GACGGTATCTGAGG 185809 >seq2102 Length=599917 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 |||| |||||| |||| ||||||||| ||||||||||||||||||| || ||| Sbjct 360217 GGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGAT 360158 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 || ||||||||||||||| | | |||||||||| || ||||| ||||| Sbjct 360157 GCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGGGGTTT 360110 >seq359 Length=971778 Score = 98.7 bits (108), Expect = 3e-18 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348 || || | ||||||| ||||||||| | ||||| |||||||| | ||||||| || Sbjct 443317 ATTTTCCGCAATGGGTGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACG 443376 Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGAAGCCCCGG 406 |||||| || ||| | ||| ||||| | ||||||||| |||||| |||| ||| Sbjct 443377 GGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGG 443436 Query 407 CTAACTACGTGCCAGCAGCCGCG 429 |||||| |||||||||||||| Sbjct 443437 CTAACTCTATGCCAGCAGCCGCG 443459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497532278528