Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq2770 378 2e-102
seq4420 122 2e-25
seq2102 104 6e-20
seq4138 86.0 2e-14
seq481 86.0 2e-14
>seq2770
Length=3071
Score = 378 bits (418), Expect = 2e-102
Identities = 281/329 (85%), Gaps = 0/329 (0%)
Strand=Plus/Minus
Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68
|| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1898 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 1839
Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128
| |||| ||||||||||||||| | |||||| || | ||||||||| ||||||| |
Sbjct 1838 TTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTCAGGGGTGAAATCCC 1779
Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188
| ||||||| | || ||||| ||||| |||| | | || |||| | || || ||||
Sbjct 1778 AGAGCTCAACTCTGGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGTAGAGGTGAGTG 1719
Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248
||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1718 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 1659
Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308
||| |||||| | |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1658 GCTCACTGGACCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1599
Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||||||||||| ||||||||||||||
Sbjct 1598 ACCCTGGTAGTCCATGCCGTAAACGATGA 1570
>seq4420
Length=188167
Score = 122 bits (134), Expect = 2e-25
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261
||||||||||||| | || || | | |||||||| |||||| || |||||| | |
Sbjct 87382 AGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 87441
Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321
|||||||||||| ||||||| |||||||||| |||||||| || | |||||||
Sbjct 87442 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACTCCAGTAGTCC 87501
Query 322 ACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAA 381
|| ||||| |||| ||||||||||| | | | | | | || | ||| ||
Sbjct 87502 TAGCTGTAAATGATGGATACTAGGTGTTGTGTGACTCGACCTGTGCAGTACTATAGCTAA 87561
Query 382 CGCAATAAGTATTCCACCTGGGGAGTA 408
||| |||||||| |||||| |||||||
Sbjct 87562 CGCGATAAGTATCCCACCTAGGGAGTA 87588
>seq2102
Length=599917
Score = 104 bits (114), Expect = 6e-20
Identities = 84/102 (82%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 360211 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 360152
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106
|||||||||||| | ||||||||||| || ||||| |||||
Sbjct 360151 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGGGGTTT 360110
>seq4138
Length=316689
Score = 86.0 bits (94), Expect = 2e-14
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 283 AGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 293639 AGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 293693
>seq481
Length=972423
Score = 86.0 bits (94), Expect = 2e-14
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333
||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 306903 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACG 306849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203145591296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |