Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2770 378 2e-102 seq4420 122 2e-25 seq2102 104 6e-20 seq4138 86.0 2e-14 seq481 86.0 2e-14 >seq2770 Length=3071 Score = 378 bits (418), Expect = 2e-102 Identities = 281/329 (85%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1898 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 1839 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||| ||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 1838 TTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTTTTAAGTCAGGGGTGAAATCCC 1779 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||| | || ||||| ||||| |||| | | || |||| | || || |||| Sbjct 1778 AGAGCTCAACTCTGGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGTAGAGGTGAGTG 1719 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1718 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 1659 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1658 GCTCACTGGACCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1599 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||| |||||||||||||| Sbjct 1598 ACCCTGGTAGTCCATGCCGTAAACGATGA 1570 >seq4420 Length=188167 Score = 122 bits (134), Expect = 2e-25 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 ||||||||||||| | || || | | |||||||| |||||| || |||||| | | Sbjct 87382 AGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 87441 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 |||||||||||| ||||||| |||||||||| |||||||| || | ||||||| Sbjct 87442 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACTCCAGTAGTCC 87501 Query 322 ACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAA 381 || ||||| |||| ||||||||||| | | | | | | || | ||| || Sbjct 87502 TAGCTGTAAATGATGGATACTAGGTGTTGTGTGACTCGACCTGTGCAGTACTATAGCTAA 87561 Query 382 CGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||||| |||||| ||||||| Sbjct 87562 CGCGATAAGTATCCCACCTAGGGAGTA 87588 >seq2102 Length=599917 Score = 104 bits (114), Expect = 6e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 360211 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 360152 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| | ||||||||||| || ||||| ||||| Sbjct 360151 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGGGGTTT 360110 >seq4138 Length=316689 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 283 AGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 293639 AGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 293693 >seq481 Length=972423 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 306903 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACG 306849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203145591296