Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 399 4e-109
seq1592 275 1e-71
seq2668 266 6e-69
seq479 190 4e-46
seq962 140 6e-31
>seq2130
Length=13169
Score = 399 bits (442), Expect = 4e-109
Identities = 274/309 (89%), Gaps = 5/309 (2%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | ||| ||| | ||| ||||||||||
Sbjct 12295 GAACGAGACCTTAACCTGCTAAATAGCCCGCATTGCTCCGGCAGTGCGCTGGCTTCTTAG 12354
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 12355 AGGGACTTTCGGCTCAAGCCGAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 12414
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| | | || |||||| |||||||||
Sbjct 12415 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGGGTCAGCGAGTT-----CCTTGGCCG 12469
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||| | |||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 12470 AAAGGCCCGGGTAATCTTGTTAGCCCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 12529
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 12530 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 12589
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 12590 CCCTTTGTA 12598
>seq1592
Length=693907
Score = 275 bits (304), Expect = 1e-71
Identities = 217/259 (84%), Gaps = 1/259 (0%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | ||||||||||||||||||||||| | |
Sbjct 471648 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTATAT 471589
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||| ||| |||||||| |||| ||||| | |||||||| ||
Sbjct 471588 AATGCCCTTAGATGTTTTGGATCGCACGCGTGCTATACTGATGTATTCAACGAGTATATA 471529
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 471528 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 471469
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 471468 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 471409
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 471408 TACGTCCCTGCCCTTTGTA 471390
Score = 269 bits (298), Expect = 5e-70
Identities = 216/259 (83%), Gaps = 1/259 (0%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 500760 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 500701
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||| ||| |||||| |||||||||| | |||||||| ||
Sbjct 500700 GATGCCCTTAGATGTTCTGAGCCACACGCGTGCTACACTGATGCATTCAACGAGTATATA 500641
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
|||| |||| | | ||||||||||||| ||| | || | |||||||||| |||
Sbjct 500640 GCCTTTGCCGATAAGCCTGGGTAATCTTGGGAAATTTCATCATAATGGGGATAGATTATT 500581
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| |||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct 500580 GCAATTGTTGATCTTCAACGAGGAATGCCTAGTAAGCACGAGTCATCAGCTCGTGTTGAC 500521
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 500520 TACGTCCCTGCCCTTTGTA 500502
>seq2668
Length=1368154
Score = 266 bits (294), Expect = 6e-69
Identities = 215/259 (83%), Gaps = 1/259 (0%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|| ||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 673147 GCGTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 673206
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||| ||||||| | | |||||||||| | ||| |||| ||
Sbjct 673207 GATGCCCTTAGATGTTCCAGGCCGCAAGTGTGCTACACTGATGTATTCAATGAGTATATA 673266
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
|||||| | ||| | ||||||||||| ||| | | ||||| |||||||||| ||||
Sbjct 673267 GTCTTGGCTGACAGGCCCGGGTAATCTTGGGAAATTGTATCGTGGTGGGGATAGATCATT 673326
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| |||||||| |||||||||||||||||||| ||||||||| || |||||
Sbjct 673327 GCAATTGTTGGTCTTCAACAAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGTGTTGAC 673386
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 673387 TACGTCCCTGCCCTTTGTA 673405
>seq479
Length=22593
Score = 190 bits (210), Expect = 4e-46
Identities = 201/261 (77%), Gaps = 4/261 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130
|||||||||||||| | |||| | || | | | | || |||||||||||||||||
Sbjct 22161 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 22102
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCA- 187
|||||||||||||| | |||||||||||| |||||||||| | || || | |||
Sbjct 22101 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATTCTG 22042
Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
| ||| ||| |||| ||||||| | | || | | ||||| ||||||| | |||
Sbjct 22041 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 21982
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| ||||||
Sbjct 21981 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 21922
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 21921 ATTACGTCCCTGCCCTTTGTA 21901
>seq962
Length=23983
Score = 140 bits (154), Expect = 6e-31
Identities = 169/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 111 GAGG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
|||| ||||||||||||||| |||||||| ||| | ||||||||||||| |||||| ||
Sbjct 22105 GAGGACAATAACAGGTCTGT-ATGCCCTTTGATATCTTGGGCCGCACGCGAGCTACATTG 22047
Query 170 ACAGAGCCAACGAGTTCATCA-----CCTTGGCCGGAAGGTCT-GGGTAATCTTGTTAAA 223
| |||| ||| ||||| || ||| |||| ||||| |||||||||| | ||
Sbjct 22046 AAAGAGACAATGAGTTTATTTAATTTCCTGTGCCGAAAGGTTACGGGTAATCTT-TGAAT 21988
Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283
||| || ||||| |||| ||| ||| | | || | |||||||||| ||| |||
Sbjct 21987 TTCTTTCACCTCTGGGATTGAGCTTTGTAATCTTAGTTCATGAACGAGGAATTCCTTGTA 21928
Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | | ||||| ||| ||||||| ||||||||||||| |||||
Sbjct 21927 AATGTGAGTCATTAGCTTGCGTTGAATACGTCCCTGCCCCTTGTA 21883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947157167616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |