Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2130 399 4e-109 seq1592 275 1e-71 seq2668 266 6e-69 seq479 190 4e-46 seq962 140 6e-31 >seq2130 Length=13169 Score = 399 bits (442), Expect = 4e-109 Identities = 274/309 (89%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | ||| ||| | ||| |||||||||| Sbjct 12295 GAACGAGACCTTAACCTGCTAAATAGCCCGCATTGCTCCGGCAGTGCGCTGGCTTCTTAG 12354 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 12355 AGGGACTTTCGGCTCAAGCCGAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 12414 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| | | || |||||| ||||||||| Sbjct 12415 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGGGTCAGCGAGTT-----CCTTGGCCG 12469 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||| | |||||||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 12470 AAAGGCCCGGGTAATCTTGTTAGCCCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 12529 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 12530 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 12589 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 12590 CCCTTTGTA 12598 >seq1592 Length=693907 Score = 275 bits (304), Expect = 1e-71 Identities = 217/259 (84%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||| | | Sbjct 471648 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTATAT 471589 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||| |||||||| |||| ||||| | |||||||| || Sbjct 471588 AATGCCCTTAGATGTTTTGGATCGCACGCGTGCTATACTGATGTATTCAACGAGTATATA 471529 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 471528 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 471469 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 471468 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 471409 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 471408 TACGTCCCTGCCCTTTGTA 471390 Score = 269 bits (298), Expect = 5e-70 Identities = 216/259 (83%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 500760 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 500701 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||| ||| |||||| |||||||||| | |||||||| || Sbjct 500700 GATGCCCTTAGATGTTCTGAGCCACACGCGTGCTACACTGATGCATTCAACGAGTATATA 500641 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| |||| | | ||||||||||||| ||| | || | |||||||||| ||| Sbjct 500640 GCCTTTGCCGATAAGCCTGGGTAATCTTGGGAAATTTCATCATAATGGGGATAGATTATT 500581 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||||||||||||||||||||| || ||||||||| || ||||| Sbjct 500580 GCAATTGTTGATCTTCAACGAGGAATGCCTAGTAAGCACGAGTCATCAGCTCGTGTTGAC 500521 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 500520 TACGTCCCTGCCCTTTGTA 500502 >seq2668 Length=1368154 Score = 266 bits (294), Expect = 6e-69 Identities = 215/259 (83%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 || ||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 673147 GCGTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 673206 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||| ||||||| | | |||||||||| | ||| |||| || Sbjct 673207 GATGCCCTTAGATGTTCCAGGCCGCAAGTGTGCTACACTGATGTATTCAATGAGTATATA 673266 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| | ||| | ||||||||||| ||| | | ||||| |||||||||| |||| Sbjct 673267 GTCTTGGCTGACAGGCCCGGGTAATCTTGGGAAATTGTATCGTGGTGGGGATAGATCATT 673326 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||| |||||||||||||||||||| ||||||||| || ||||| Sbjct 673327 GCAATTGTTGGTCTTCAACAAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGTGTTGAC 673386 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 673387 TACGTCCCTGCCCTTTGTA 673405 >seq479 Length=22593 Score = 190 bits (210), Expect = 4e-46 Identities = 201/261 (77%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | || | | | | || ||||||||||||||||| Sbjct 22161 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 22102 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCA- 187 |||||||||||||| | |||||||||||| |||||||||| | || || | ||| Sbjct 22101 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATTCTG 22042 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | ||| Sbjct 22041 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 21982 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||||| Sbjct 21981 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 21922 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 21921 ATTACGTCCCTGCCCTTTGTA 21901 >seq962 Length=23983 Score = 140 bits (154), Expect = 6e-31 Identities = 169/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 111 GAGG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||| ||||||||||||||| |||||||| ||| | ||||||||||||| |||||| || Sbjct 22105 GAGGACAATAACAGGTCTGT-ATGCCCTTTGATATCTTGGGCCGCACGCGAGCTACATTG 22047 Query 170 ACAGAGCCAACGAGTTCATCA-----CCTTGGCCGGAAGGTCT-GGGTAATCTTGTTAAA 223 | |||| ||| ||||| || ||| |||| ||||| |||||||||| | || Sbjct 22046 AAAGAGACAATGAGTTTATTTAATTTCCTGTGCCGAAAGGTTACGGGTAATCTT-TGAAT 21988 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 ||| || ||||| |||| ||| ||| | | || | |||||||||| ||| ||| Sbjct 21987 TTCTTTCACCTCTGGGATTGAGCTTTGTAATCTTAGTTCATGAACGAGGAATTCCTTGTA 21928 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | ||||| ||| ||||||| ||||||||||||| ||||| Sbjct 21927 AATGTGAGTCATTAGCTTGCGTTGAATACGTCCCTGCCCCTTGTA 21883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947157167616