Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1114 181 4e-43 seq203 123 8e-26 seq3127 95.1 4e-17 seq1159 80.6 9e-13 >seq1114 Length=1590138 Score = 181 bits (200), Expect = 4e-43 Identities = 320/459 (70%), Gaps = 27/459 (6%) Strand=Plus/Minus Query 38 CCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGT 96 |||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||||| Sbjct 1025232 CCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGA 1025173 Query 97 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA 156 |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| || Sbjct 1025172 CCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAAC 1025113 Query 157 CAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC 216 ||| | ||| |||||||||| || ||||| |||||| |||| || | | || | Sbjct 1025112 CAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATGTCG 1025055 Query 217 AT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAACCA 269 || | | ||||||||||| |||||||| | |||| || ||||||| || Sbjct 1025054 ATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCC 1024995 Query 270 TTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCT 323 | ||||||||||| | |||| | ||| | || ||| |||||||| Sbjct 1024994 AGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGTGCT 1024939 Query 324 AAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGC 383 ||| ||| ||||||| || | ||||| | ||||||| ||| || | | Sbjct 1024938 AAGATCCAAAGTCGAGAGGGAAACAGCCCGGATCGTACGCTAAGGTCCCTAAGCAATCAC 1024879 Query 384 TAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441 | ||| || || |||| |||| || | |||| | |||| || ||||||||||||| Sbjct 1024878 TTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAG 1024823 Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || ||| |||| |||||| |||||||| ||| || Sbjct 1024822 CCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1024785 >seq203 Length=971741 Score = 123 bits (136), Expect = 8e-26 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 757472 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 757531 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 757532 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 757591 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 757592 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 757651 Query 182 CCGAAA 187 |||||| Sbjct 757652 CCGAAA 757657 >seq3127 Length=515356 Score = 95.1 bits (104), Expect = 4e-17 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||||| ||| ||| | | ||||| || |||||||| ||||| | |||||||| Sbjct 108216 AGGGCGATTGTCACTGCTTATGGACCCAAACTTGGGTGATCTATCCATGACTAGGATGAA 108157 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | | | | || | |||||| ||||| ||| |||||||| ||| || |||||| Sbjct 108156 GCTTGGATGAAACTAAGTAGAGGTCTGAACCGACTGATGTTGAAGAATCAGCCGATGAGT 108097 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 ||||| ||||||||||| || | || || | || | ||||||||||| Sbjct 108096 TGTGGTTAGGGGTGAAATGCCACCCAGACCTAGAGCGAACTGGTTCTCTC 108047 >seq1159 Length=739970 Score = 80.6 bits (88), Expect = 9e-13 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 217352 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 217409 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 217410 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 217468 Query 456 AGT 458 ||| Sbjct 217469 AGT 217471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689523596288