Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 181 4e-43
seq203 123 8e-26
seq3127 95.1 4e-17
seq1159 80.6 9e-13
>seq1114
Length=1590138
Score = 181 bits (200), Expect = 4e-43
Identities = 320/459 (70%), Gaps = 27/459 (6%)
Strand=Plus/Minus
Query 38 CCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGT 96
|||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||||
Sbjct 1025232 CCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGA 1025173
Query 97 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA 156
|||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1025172 CCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAAC 1025113
Query 157 CAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC 216
||| | ||| |||||||||| || ||||| |||||| |||| || | | || |
Sbjct 1025112 CAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATGTCG 1025055
Query 217 AT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAACCA 269
|| | | ||||||||||| |||||||| | |||| || ||||||| ||
Sbjct 1025054 ATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCC 1024995
Query 270 TTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCT 323
| ||||||||||| | |||| | ||| | || ||| ||||||||
Sbjct 1024994 AGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGTGCT 1024939
Query 324 AAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGC 383
||| ||| ||||||| || | ||||| | ||||||| ||| || | |
Sbjct 1024938 AAGATCCAAAGTCGAGAGGGAAACAGCCCGGATCGTACGCTAAGGTCCCTAAGCAATCAC 1024879
Query 384 TAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441
| ||| || || |||| |||| || | |||| | |||| || |||||||||||||
Sbjct 1024878 TTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAG 1024823
Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 1024822 CCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1024785
>seq203
Length=971741
Score = 123 bits (136), Expect = 8e-26
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||||
Sbjct 757472 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 757531
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | | | | || |||||||||||| ||| |||||||| |||
Sbjct 757532 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 757591
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 757592 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 757651
Query 182 CCGAAA 187
||||||
Sbjct 757652 CCGAAA 757657
>seq3127
Length=515356
Score = 95.1 bits (104), Expect = 4e-17
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72
||||||| ||| ||| | | ||||| || |||||||| ||||| | ||||||||
Sbjct 108216 AGGGCGATTGTCACTGCTTATGGACCCAAACTTGGGTGATCTATCCATGACTAGGATGAA 108157
Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132
| | | | | || | |||||| ||||| ||| |||||||| ||| || ||||||
Sbjct 108156 GCTTGGATGAAACTAAGTAGAGGTCTGAACCGACTGATGTTGAAGAATCAGCCGATGAGT 108097
Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182
||||| ||||||||||| || | || || | || | |||||||||||
Sbjct 108096 TGTGGTTAGGGGTGAAATGCCACCCAGACCTAGAGCGAACTGGTTCTCTC 108047
>seq1159
Length=739970
Score = 80.6 bits (88), Expect = 9e-13
Identities = 93/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | |
Sbjct 217352 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 217409
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| |||||||| |||| ||| || | |||||||||| | |||||||
Sbjct 217410 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 217468
Query 456 AGT 458
|||
Sbjct 217469 AGT 217471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689523596288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |