Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq203 123 5e-26
seq2770 109 1e-21
seq4189 84.2 4e-14
seq225 80.6 5e-13
>seq203
Length=971741
Score = 123 bits (136), Expect = 5e-26
Identities = 175/243 (72%), Gaps = 10/243 (4%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| ||||
Sbjct 756840 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 756899
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| || ||| || |||| ||||
Sbjct 756900 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 756951
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||
Sbjct 756952 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 757010
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 757011 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 757070
Query 249 CCT 251
|||
Sbjct 757071 CCT 757073
>seq2770
Length=3071
Score = 109 bits (120), Expect = 1e-21
Identities = 95/117 (81%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| |||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 136 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATA 77
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| ||||||| | || || || |||||||||| ||||||||||||||| |||||
Sbjct 76 AGCGTCGGGGAG-GTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGCAACCC 21
>seq4189
Length=292293
Score = 84.2 bits (92), Expect = 4e-14
Identities = 89/116 (77%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||||||| ||| | | |||| || || ||| ||||||||||||| | |||| |
Sbjct 103762 TGCTGAATCCATGAGCAAGCAAGAGACAATCTGGCAAACTGAAACATCTTAATAGCCAGA 103703
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| ||| | ||||| || ||||| ||||||||||||||| |||||
Sbjct 103702 GGAAAAGAAAACAAAAGCGATTCTCATAGTAGCAGCGAGCGAAATGGGAGCAGCCT 103647
>seq225
Length=1886406
Score = 80.6 bits (88), Expect = 5e-13
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229
|||||| |||||||| |||||| || |||||||| ||| | ||||||| ||||| |
Sbjct 1361550 CGAACTAAAACATCTTAGTAGCCAGAGAAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCG 1361491
Query 230 GCGAGCGAAATGGGATGAGCCT 251
||||||||||||||| |||||
Sbjct 1361490 GCGAGCGAAATGGGAGTAGCCT 1361469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918358469952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |