Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq203 123 5e-26 seq2770 109 1e-21 seq4189 84.2 4e-14 seq225 80.6 5e-13 >seq203 Length=971741 Score = 123 bits (136), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 756840 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 756899 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 756900 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 756951 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 756952 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 757010 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 757011 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 757070 Query 249 CCT 251 ||| Sbjct 757071 CCT 757073 >seq2770 Length=3071 Score = 109 bits (120), Expect = 1e-21 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||||||||||||| || ||||||| Sbjct 136 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATA 77 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| ||||||| | || || || |||||||||| ||||||||||||||| ||||| Sbjct 76 AGCGTCGGGGAG-GTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGCAACCC 21 >seq4189 Length=292293 Score = 84.2 bits (92), Expect = 4e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| | | |||| || || ||| ||||||||||||| | |||| | Sbjct 103762 TGCTGAATCCATGAGCAAGCAAGAGACAATCTGGCAAACTGAAACATCTTAATAGCCAGA 103703 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| || ||||| ||||||||||||||| ||||| Sbjct 103702 GGAAAAGAAAACAAAAGCGATTCTCATAGTAGCAGCGAGCGAAATGGGAGCAGCCT 103647 >seq225 Length=1886406 Score = 80.6 bits (88), Expect = 5e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 |||||| |||||||| |||||| || |||||||| ||| | ||||||| ||||| | Sbjct 1361550 CGAACTAAAACATCTTAGTAGCCAGAGAAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCG 1361491 Query 230 GCGAGCGAAATGGGATGAGCCT 251 ||||||||||||||| ||||| Sbjct 1361490 GCGAGCGAAATGGGAGTAGCCT 1361469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918358469952