Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4368 729 0.0 seq2668 639 0.0 seq1592 639 0.0 seq2130 632 7e-179 seq3443 311 3e-82 seq962 246 1e-62 seq479 168 2e-39 seq1114 78.8 3e-12 >seq4368 Length=1120585 Score = 729 bits (808), Expect = 0.0 Identities = 483/532 (91%), Gaps = 5/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 924701 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 924760 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 924761 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 924820 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183 ||||| || || | ||||| |||| ||| || || | | || | |||||| ||| Sbjct 924821 GGCCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGGCCCCGCTTCCGCCTCAC 924878 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| |||||||||||||||||||||| ||||||||| Sbjct 924879 GGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCTTTTGGGCTCCCAC 924938 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924939 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 924998 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 924999 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 925058 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925059 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 925118 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925119 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 925178 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 925179 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 925230 >seq2668 Length=1368154 Score = 639 bits (708), Expect = 0.0 Identities = 463/532 (87%), Gaps = 5/532 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || | | ||||||||||||| | | || | ||||||||||||||||||| Sbjct 1136224 CTTTTGTTCCATACGAGATTTCTGTTCCCATTAAGCTCATCTTAGGACACCTGCGTTATC 1136165 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 1136164 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCTTCTGCCTGGATC 1136105 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTT-CCGCTTCAT 183 |||| || || | ||||| |||| ||| || || | | || ||| ||| ||| Sbjct 1136104 AGCCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGGCCCCGTTTCCGTCTCAC 1136047 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| ||| ||| |||||||||||||||||| ||| ||||||||| Sbjct 1136046 GGAATAAGTAAAATAACATTAAAAGTAGTGGTATTTCACTTGTGCCTTTTGGGCTCCCAC 1135987 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135986 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 1135927 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||| |||||| |||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1135926 TTCTTTCCCCGTTGATTCTGCCAAGCCTGTTCCCTTGGCCGTGGTTTCGCTGGATAGTAG 1135867 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1135866 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGATGACAAGGC 1135807 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||| Sbjct 1135806 ATTTGGCTACCTTAAGAGAGTCACAGTTACTCCCACCGTTTACCCGTGCTTAGTTGAATT 1135747 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1135746 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 1135695 >seq1592 Length=693907 Score = 639 bits (708), Expect = 0.0 Identities = 463/532 (87%), Gaps = 5/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||||| |||||| Sbjct 467972 CTTTTGTTCCACATGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 468031 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||| ||||| | || || ||||||| ||||||||||||||| || |||| || Sbjct 468032 TTTTAACAGGTGTGCTGTCCTAGTCAAACTCTCCACCTGACAATGTCTTCCGCCCGAATT 468091 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183 | ||| || || | ||||| |||| ||| || || | || | |||||| || | Sbjct 468092 GACCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGACCCCGCTTCCGCCTCGT 468149 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| |||||||||||||||||||||| ||||||||| Sbjct 468150 AGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCTTTTGGGCTCCCAC 468209 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468210 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 468269 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 468270 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 468329 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 468330 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGTGTCACTAATTAGATGATGAGGT 468389 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 468390 ATTTGGCTATCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCCGCGCTTGGTTAAATT 468449 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 | ||||||||||||||||||||||| |||| |||||||||||||||| |||| Sbjct 468450 TTTTCACTTTGACATTCAGAGCACTAGGCAAAAATCACATTGCGTCAGCATC 468501 >seq2130 Length=13169 Score = 632 bits (700), Expect = 7e-179 Identities = 409/445 (92%), Gaps = 5/445 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 440 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 381 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 380 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 321 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| |||||| ||| || |||| |||| |||||||||||| Sbjct 320 AGCCCGCGAAGGACCTTAAAACCAGAATTTGGACG-TGAAT-CCAGCCCCGCTTCATTGA 263 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| ||||||||||||||||| |||||||| |||||||| || Sbjct 262 ATAAGTAAAAAAACAATAGGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 206 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | ||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 205 TCCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 146 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 145 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACA 86 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 26 Query 427 TGGCTACCTTAAGAGAGTCATAGTT 451 ||||||||||||||||||||||||| Sbjct 25 TGGCTACCTTAAGAGAGTCATAGTT 1 >seq3443 Length=1307 Score = 311 bits (344), Expect = 3e-82 Identities = 187/197 (95%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 197 TCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATCTCGCCAA 138 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 137 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAAGTAGGGACAGATGGAATCTCGTTA 78 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 18 Query 448 AGTTACTCCCGCCGTTT 464 ||||||||||||||||| Sbjct 17 AGTTACTCCCGCCGTTT 1 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 ||||| |||||||||| |||| |||| | ||||||||||| ||||| ||| | Sbjct 521 TCTACGTGAGATTTCTGGTCTCACTGAGCTAACATTAGGACACCTACGTTAGCATTTGAT 462 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||| ||||||||| |||||||||| |||| || |||| Sbjct 461 AGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCACTGTC 422 >seq962 Length=23983 Score = 246 bits (272), Expect = 1e-62 Identities = 147/154 (95%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1162 TCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 1103 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| Sbjct 1102 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTACACGTTGACATT 1043 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||| |||||||| ||||||| Sbjct 1042 CAGAGCACTGGGCAGAATTCACATTGAGTCAACA 1009 >seq479 Length=22593 Score = 168 bits (186), Expect = 2e-39 Identities = 95/96 (99%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 60 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||| ||||| Sbjct 61 CATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 96 >seq1114 Length=1590138 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 1023391 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 1023450 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 1023451 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 1023496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635126056256