Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq4368 729 0.0
seq2668 639 0.0
seq1592 639 0.0
seq2130 632 7e-179
seq3443 311 3e-82
seq962 246 1e-62
seq479 168 2e-39
seq1114 78.8 3e-12
>seq4368
Length=1120585
Score = 729 bits (808), Expect = 0.0
Identities = 483/532 (91%), Gaps = 5/532 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 924701 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 924760
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 924761 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 924820
Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183
||||| || || | ||||| |||| ||| || || | | || | |||||| |||
Sbjct 924821 GGCCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGGCCCCGCTTCCGCCTCAC 924878
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||||||| |||| ||| |||||||||||||||||||||| |||||||||
Sbjct 924879 GGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCTTTTGGGCTCCCAC 924938
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924939 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 924998
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924999 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 925058
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925059 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 925118
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925119 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 925178
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 925179 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 925230
>seq2668
Length=1368154
Score = 639 bits (708), Expect = 0.0
Identities = 463/532 (87%), Gaps = 5/532 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || | | ||||||||||||| | | || | |||||||||||||||||||
Sbjct 1136224 CTTTTGTTCCATACGAGATTTCTGTTCCCATTAAGCTCATCTTAGGACACCTGCGTTATC 1136165
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1136164 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCTTCTGCCTGGATC 1136105
Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTT-CCGCTTCAT 183
|||| || || | ||||| |||| ||| || || | | || ||| ||| |||
Sbjct 1136104 AGCCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGGCCCCGTTTCCGTCTCAC 1136047
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||||||| ||| ||| |||||||||||||||||| ||| |||||||||
Sbjct 1136046 GGAATAAGTAAAATAACATTAAAAGTAGTGGTATTTCACTTGTGCCTTTTGGGCTCCCAC 1135987
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135986 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 1135927
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1135926 TTCTTTCCCCGTTGATTCTGCCAAGCCTGTTCCCTTGGCCGTGGTTTCGCTGGATAGTAG 1135867
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1135866 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGATGACAAGGC 1135807
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||
Sbjct 1135806 ATTTGGCTACCTTAAGAGAGTCACAGTTACTCCCACCGTTTACCCGTGCTTAGTTGAATT 1135747
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1135746 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 1135695
>seq1592
Length=693907
Score = 639 bits (708), Expect = 0.0
Identities = 463/532 (87%), Gaps = 5/532 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||| ||||||
Sbjct 467972 CTTTTGTTCCACATGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 468031
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||| ||||| | || || ||||||| ||||||||||||||| || |||| ||
Sbjct 468032 TTTTAACAGGTGTGCTGTCCTAGTCAAACTCTCCACCTGACAATGTCTTCCGCCCGAATT 468091
Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183
| ||| || || | ||||| |||| ||| || || | || | |||||| || |
Sbjct 468092 GACCCACGGAGTGGGCCTTAGAGCCAAAAAGAGG--GGCCAGACCCCGCTTCCGCCTCGT 468149
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||||||| |||| ||| |||||||||||||||||||||| |||||||||
Sbjct 468150 AGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCTTTTGGGCTCCCAC 468209
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468210 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 468269
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 468270 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 468329
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 468330 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGTGTCACTAATTAGATGATGAGGT 468389
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 468390 ATTTGGCTATCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCCGCGCTTGGTTAAATT 468449
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
| ||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 468450 TTTTCACTTTGACATTCAGAGCACTAGGCAAAAATCACATTGCGTCAGCATC 468501
>seq2130
Length=13169
Score = 632 bits (700), Expect = 7e-179
Identities = 409/445 (92%), Gaps = 5/445 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 440 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 381
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 380 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 321
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| |||||| ||| || |||| |||| ||||||||||||
Sbjct 320 AGCCCGCGAAGGACCTTAAAACCAGAATTTGGACG-TGAAT-CCAGCCCCGCTTCATTGA 263
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 262 ATAAGTAAAAAAACAATAGGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 206
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
| ||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 205 TCCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 146
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 145 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACA 86
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 26
Query 427 TGGCTACCTTAAGAGAGTCATAGTT 451
|||||||||||||||||||||||||
Sbjct 25 TGGCTACCTTAAGAGAGTCATAGTT 1
>seq3443
Length=1307
Score = 311 bits (344), Expect = 3e-82
Identities = 187/197 (95%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327
|||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 197 TCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATCTCGCCAA 138
Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 137 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAAGTAGGGACAGATGGAATCTCGTTA 78
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 18
Query 448 AGTTACTCCCGCCGTTT 464
|||||||||||||||||
Sbjct 17 AGTTACTCCCGCCGTTT 1
Score = 86.0 bits (94), Expect = 2e-14
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73
||||| |||||||||| |||| |||| | ||||||||||| ||||| ||| |
Sbjct 521 TCTACGTGAGATTTCTGGTCTCACTGAGCTAACATTAGGACACCTACGTTAGCATTTGAT 462
Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||||| ||||||||| |||||||||| |||| || ||||
Sbjct 461 AGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCACTGTC 422
>seq962
Length=23983
Score = 246 bits (272), Expect = 1e-62
Identities = 147/154 (95%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 1103
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 1102 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTACACGTTGACATT 1043
Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||| |||||||| |||||||
Sbjct 1042 CAGAGCACTGGGCAGAATTCACATTGAGTCAACA 1009
>seq479
Length=22593
Score = 168 bits (186), Expect = 2e-39
Identities = 95/96 (99%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 60
Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||| |||||
Sbjct 61 CATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 96
>seq1114
Length=1590138
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 1023391 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 1023450
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 1023451 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 1023496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635126056256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |